pi.dosage: Estimates nucleotide diversity (pi) from dosage data
In hierfstat: Estimation and Tests of Hierarchical F-Statistics
pi.dosage R Documentation
Estimates nucleotide diversity (π) from dosage data
Description
Estimates nucleotide diversity π= ∑_l 2 p_ l(1-p_l) 2n/(2n-1) from a
dosage matrix
Usage
pi.dosage(dos,L=NULL)
Arguments
dos
a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries
at each SNP
L
the length of the sequence
Value
if L=NULL (default), returns the sum over SNPs of nucleotide diversity;
otherwise return the average nucleotide diversity per nucleotide given the length L of the sequence
hierfstat documentation built on May 6, 2022, 1:05 a.m.
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| pi.dosage | R Documentation |
Estimates nucleotide diversity (π) from dosage data
Description
Estimates nucleotide diversity π= ∑_l 2 p_ l(1-p_l) 2n/(2n-1) from a dosage matrix
Usage
pi.dosage(dos,L=NULL)
Arguments
dos |
a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries at each SNP |
L |
the length of the sequence |
Value
if L=NULL (default), returns the sum over SNPs of nucleotide diversity;
otherwise return the average nucleotide diversity per nucleotide given the length L of the sequence
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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