matching: Estimates matching between pairs of individuals
In hierfstat: Estimation and Tests of Hierarchical F-Statistics
matching R Documentation
Estimates matching between pairs of individuals
Description
Estimates matching between pairs of individuals (for each locus, gives 1 if the two individuals are homozygous
for the same allele, 0 if they are homozygous for a different allele, and 1/2 if at least one individual
is heterozygous. Matching is the average of these 0, 1/2 and 1s)
Usage
matching(dos)
Arguments
dos
A matrix of 0, 1 and 2s with loci (SNPs) in columns and individuals in rows.
missing values are allowed
Details
This function is written for dosage data, i.e., how many doses of an allele (0, 1 or 2) an individual carries.
It should be use for bi-allelic markers only (e.g. SNPs), although you might "force" a k multiallelic locus to k
biallelic loci (see fstat2dos).
Value
a matrix of pairwise matching
hierfstat documentation built on May 6, 2022, 1:05 a.m.
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| matching | R Documentation |
Estimates matching between pairs of individuals
Description
Estimates matching between pairs of individuals (for each locus, gives 1 if the two individuals are homozygous for the same allele, 0 if they are homozygous for a different allele, and 1/2 if at least one individual is heterozygous. Matching is the average of these 0, 1/2 and 1s)
Usage
matching(dos)
Arguments
dos |
A matrix of 0, 1 and 2s with loci (SNPs) in columns and individuals in rows. missing values are allowed |
Details
This function is written for dosage data, i.e., how many doses of an allele (0, 1 or 2) an individual carries.
It should be use for bi-allelic markers only (e.g. SNPs), although you might "force" a k multiallelic locus to k
biallelic loci (see fstat2dos).
Value
a matrix of pairwise matching
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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