hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

AuthorDaniel Fischer [aut, cre], Anu Sironen [aut]
Date of publication2016-10-31 16:53:51
MaintainerDaniel Fischer <daniel.fischer@luke.fi>
LicenseGPL (>= 2)
Version0.9.2

View on CRAN

Files in this package

hoardeR
hoardeR/inst
hoardeR/inst/ChangeLog
hoardeR/inst/doc
hoardeR/inst/doc/hoardeR-vignette.R
hoardeR/inst/doc/hoardeR-vignette.pdf
hoardeR/inst/doc/hoardeR-vignette.Rmd
hoardeR/NAMESPACE
hoardeR/data
hoardeR/data/species.rda
hoardeR/R
hoardeR/R/aaa.R hoardeR/R/print.blastRes.R hoardeR/R/subGProbs.R hoardeR/R/intersectXMLAnnot.R hoardeR/R/getEnsgInfo.R hoardeR/R/subPhased.R hoardeR/R/blastSeq.R hoardeR/R/getFastaFromBed.R hoardeR/R/sendFA.R hoardeR/R/summary.blastRes.R hoardeR/R/importBlastTab.R hoardeR/R/importXML.R hoardeR/R/helpFunctions.R hoardeR/R/getGeneSeq.R hoardeR/R/plotHit.R hoardeR/R/getGeneLocation.R hoardeR/R/importFA.R hoardeR/R/createSpecies.R hoardeR/R/importBed.R hoardeR/R/subDose.R hoardeR/R/exportBed.R hoardeR/R/xxx.R hoardeR/R/tableSpecies.R hoardeR/R/getAnnotation.R hoardeR/R/summary.fa.R hoardeR/R/exportFA.R hoardeR/R/findSpecies.R hoardeR/R/targetScan.R hoardeR/R/getBlastResult.R hoardeR/R/print.fa.R
hoardeR/vignettes
hoardeR/vignettes/coverageExample.png
hoardeR/vignettes/pigFlanking.png
hoardeR/vignettes/hoardeR-vignette.Rmd
hoardeR/MD5
hoardeR/build
hoardeR/build/vignette.rds
hoardeR/DESCRIPTION
hoardeR/man
hoardeR/man/findSpecies.Rd hoardeR/man/plotHit.Rd hoardeR/man/exportBed.Rd hoardeR/man/print.fa.Rd hoardeR/man/importBed.Rd hoardeR/man/importFA.Rd hoardeR/man/getGeneSeq.Rd hoardeR/man/getEnsgInfo.Rd hoardeR/man/subDose.Rd hoardeR/man/importXML.Rd hoardeR/man/blastSeq.Rd hoardeR/man/summary.fa.Rd hoardeR/man/hoardeR-package.Rd hoardeR/man/getGeneLocation.Rd hoardeR/man/getFastaFromBed.Rd hoardeR/man/species.Rd hoardeR/man/subPhased.Rd hoardeR/man/exportFA.Rd hoardeR/man/targetScan.Rd hoardeR/man/intersectXMLAnnot.Rd hoardeR/man/subGprobs.Rd hoardeR/man/importBlastTab.Rd hoardeR/man/getAnnotation.Rd hoardeR/man/tableSpecies.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.