hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Install the latest version of this package by entering the following in R:
install.packages("hoardeR")
AuthorDaniel Fischer [aut, cre], Anu Sironen [aut]
Date of publication2016-10-31 16:53:51
MaintainerDaniel Fischer <daniel.fischer@luke.fi>
LicenseGPL (>= 2)
Version0.9.2

View on CRAN

Functions

blastSeq Man page
exportBed Man page
exportFA Man page
findSpecies Man page
getAnnotation Man page
getEnsgInfo Man page
getFastaFromBed Man page
getGeneLocation Man page
getGeneSeq Man page
importBed Man page
importBlastTab Man page
importFA Man page
importXML Man page
intersectXMLAnnot Man page
plotHit Man page
print.fa Man page
print,fa-method Man page
R/hoardeR-package Man page
species Man page
subDose Man page
subGprobs Man page
subPhased Man page
summary.fa Man page
summary,fa-method Man page
tableSpecies Man page
targetScan Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.