species: Available species at NCBI
In hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
Description
Format
Source
Examples
Description
This is a list of all organisms/species that are provided by NCBI and hence could end up in the Blast run. Further, it defines the default versions of
the assuemblies that will be downloaded if no further version is specified in plotHit, getAnnotation or getFastaFromBed.
Format
A data frame with 348 species.
Source
As downloaded on 05.10.2016 from
ftp://ftp.ncbi.nlm.nih.gov/genomes/
Examples
1
2
hoardeR documentation built on May 2, 2019, 5:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Format Source Examples
Description
This is a list of all organisms/species that are provided by NCBI and hence could end up in the Blast run. Further, it defines the default versions of
the assuemblies that will be downloaded if no further version is specified in plotHit, getAnnotation or getFastaFromBed.
Format
A data frame with 348 species.
Source
As downloaded on 05.10.2016 from
ftp://ftp.ncbi.nlm.nih.gov/genomes/
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.