comorbid_df_to_mat: convert comorbidity matrix to data frame
In icd: Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes

Description Usage Arguments See Also Examples

convert matrix of comorbidities into data frame, preserving visit_name information

comorbid_df_to_mat(
  x,
  visit_name = get_visit_name(x),
  stringsAsFactors = getOption("stringsAsFactors")
)

`x`	data frame, with a `visit_name` column (not necessarily first), and other columns with flags for comorbidities, as such column names are required.
`visit_name`	The name of the column in the data frame which contains the patient or visit identifier. Typically this is the visit identifier, since patients come leave and enter hospital with different ICD-9 codes. It is a character vector of length one. If left empty, or `NULL`, then an attempt is made to guess which field has the ID for the patient encounter (not a patient ID, although this can of course be specified directly). The guesses proceed until a single match is made. Data frames may be wide with many matching fields, so to avoid false positives, anything but a single match is rejected. If there are no successful guesses, and `visit_id` was not specified, then the first column of the data frame is used.
`stringsAsFactors`	Single logical value, describing whether the resulting data frame should have strings, e.g. `visit_id` converted to factor. Default is to follow the current session option. This is identical to the argument used in, among other base functions `as.data.frame`.

comorbid_mat_to_df

Other ICD data conversion: comorbid_mat_to_df(), convert, decimal_to_short(), long_to_wide(), short_to_decimal(), wide_to_long()

longdf <- icd_long_data(
  visit = c("a", "b", "b", "c"),
  icd9 = c("441", "4240", "443", "441")
)
cmbdf <- icd9_comorbid_elix(longdf, return_df = TRUE)
class(cmbdf)
rownames(cmbdf)
mat.out <- comorbid_df_to_mat(cmbdf)
stopifnot(is.matrix(mat.out))
mat.out[, 1:4]