clint_PREJAGS | R Documentation |
The arguments given to JAGS for the tested compound during level-4 processing of mass spectrometry measurements of intrinsic hepatic clearance (Clint) for cryopreserved pooled human hepatocytes. Chemicals were per- and poly-fluorinated alkyl substance (PFAS) samples. The experiments were led by Dr.s Marci Smeltz and Barbara Wetmore \insertCitesmeltz2023plasmainvitroTKstats. This list is overwritten for each tested compound. Therefore, only contains arguments given to JAGS for the last tested compound.
clint_PREJAGS
A named list with 26 elements:
obs
Response
of the "Cvst" sample types for the tested compound
Test.Nominal.Conc
Unique Test.Nominal.Conc
values (expected initial concentration) of "Cvst" sample types
Num.cal
Unique number of Calibration
values
Num.obs
Number of Response
of the "Cvst" sample types for the tested compound
obs.conc
Indices of the Test.Nominal.Conc
values that corresponds to the "Cvst" sample types' Test.Nominal.Conc
obs.time
Time
of the "Cvst" sample types for the tested compound
obs.cal
Indices of the unique "Cvst" Calibration
values that corresponds to the "Cvst" sample types' Calibration
obs.Dilution.Factor
Dilution Factor
of the "Cvst" sample types for the tested compound (number of times the sample was diluted)
Num.blank.obs
Number of "Blank" sample types for the tested compound
Blank.obs
Response
of the "Blank" sample types for the tested compound
Blank.cal
Indices of the unique "Blank" Calibration
values that corresponds to the "Blank" sample types' Calibration
Blank.Dilution.Factor
Dilution Factor
of the "Blank" sample types for the tested compound (number of times the sample was diluted)
Num.cc
Number of "CC" sample types with non-NA Test.Compound.Conc
values for the tested compound
cc.obs.conc
Test.Compound.Conc
(non-NA) of the "CC" sample types for the tested compound
cc.obs
Response
of the "CC" sample types with non-NA Test.Compound.Conc
for the tested compound
cc.obs.cal
Indices of the unique "CC" Calibration
values that corresponds to the "CC" sample types' Calibration
cc.obs.Dilution.Factor
Dilution Factor
of the "CC" sample types (number of times the sample was diluted) with non-NA Test.Compound.Conc
for the tested compound
Num.abio.obs
Number of "Inactive" samples types for the tested compound
abio.obs
Response
of the "Inactive" sample types for the tested compound
abio.obs.conc
Indices of the Test.Nominal.Conc
values that corresponds to the "Inactive" sample types' Test.Nominal.Conc
abio.obs.time
Time
of the "Inactive" sample types for the tested compound
abio.obs.cal
Indices of the unique "Inactive" Calibration
values that corresponds to the "Inactive" sample types' Calibration
abio.obs.Dilution.Factor
Dilution Factor
of the "Inactive" sample types for the tested compound (number of times the sample was diluted)
DECREASE.PROB
Prior probability that a chemical will decrease in the assay. (Defaults to 0.5.)
SATURATE.PROB
Prior probability that a chemicals rate of metabolism will decrease between 1 and 10 uM. (Defaults to 0.25.)
DEGRADE.PROB
Prior probability that a chemical will be unstable (degrade abiotically) in the assay. (Defaults to 0.05.)
shibata2002predictioninvitroTKstats
\insertRefsmeltz2023plasmainvitroTKstats
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