fup_red_PREJAGS | R Documentation |
The arguments given to JAGS for the tested compound during level-4 processing of mass spectrometry measurements of plasma protein binding (PPB) via rapid equilibrium dialysis (RED) for per- and poly-fluorinated alkyl substance (PFAS) samples. Experiments were led by Dr.s Marci Smeltz and Barbara Wetmore \insertCitesmeltz2023plasmainvitroTKstats. This list is overwritten for each tested compound. Therefore, only contains arguments given to JAGS for the last tested compound.
fup_red_PREJAGS
A named list with 33 elements:
Test.Nominal.Conc
Unique Test.Nominal.Conc
values (expected initial concentration) for the tested compound
Num.cal
Unique number of Calibration
values for the tested compound
Physiological.Protein.Conc
The assumed physiological protein concentration for plasma protein binding calculations. (Defaults to 70/(66.5*1000)*1000000. According to \insertCiteberg2011pathology;textualinvitroTKstats: 60-80 mg/mL, albumin is 66.5 kDa, assume all protein is albumin to estimate default in uM.)
Assay.Protein.Perecent
Percent.Physiologic.Plasma
values for each "Plasma" sample type replicate group
Num.Plasma.Blank.obs
Number of "Plasma.Blank" sample types for the tested compound
Plasma.Blank.obs
Response
of the "Plasma.Blank" sample types for the tested compound
Plasma.Blank.cal
Indices of the unique Calibration
values that corresponds to the "Plasma.Blank" sample types' Calibration
for the tested compound
Plasma.Blank.df
Unique Dilution Factor
of the "Plasma.Blank" sample types for the tested compound
Plasma.Blank.rep
Integer representing "Plasma.Blank" replicate group for the tested compound
Num.NoPlasma.Blank.obs
Number of "NoPlasma.Blank" sample types for the tested compound
NoPlasma.Blank.obs
Response
of the "NoPlasma.Blank" sample types for the tested compound
NoPlasma.Blank.cal
Indices of the unique Calibration
values that corresponds to the "NoPlasma.Blank" sample types' Calibration
for the tested compound
NoPlasma.Blank.df
Unique Dilution Factor
of the "NoPlasma.Blank" sample types for the tested compound
Num.CC.obs
Number of "CC" sample types with non-NA Test.Compound.Conc
values for the tested compound
CC.conc
Test.Compound.Conc
(non-NA) of the "CC" sample types for the tested compound
CC.obs
Response
of the "CC" sample types with non-NA Test.Compound.Conc
for the tested compound
CC.cal
Indices of the unique Calibration
values that corresponds to the "CC" sample types' Calibration
for the tested compound
CC.df
Unique Dilution Factor
of the "NoPlasma.Blank" sample types for the tested compound
Num.T0.obs
Number of "T0" sample types for the tested compound
T0.obs
Response
of the "T0" sample types for the tested compound
T0.cal
Indices of the unique Calibration
values that corresponds to the "T0" sample types' Calibration
for the tested compound
T0.df
Unique Dilution Factor
of the "T0" sample types for the tested compound
Num.rep
Unique number of (Calibration
+ Technical.Replicates
) combinations for "PBS" and "Plasma" sample types for the tested compound
Num.PBS.obs
Number of "PBS" sample types for the tested compound
PBS.obs
Response
of the "PBS" sample types for the tested compound
PBS.cal
Indices of the unique Calibration
values that corresponds to the "PBS" sample types' Calibration
for the tested compound
PBS.df
Unique Dilution Factor
of the "PBS" sample types for the tested compound
PBS.rep
Integer representing "PBS" replicate group for the tested compound
Num.Plasma.obs
Number of "Plasma" sample types for the tested compound
Plasma.obs
Response
of the "Plasma" sample types for the tested compound
Plasma.cal
Indices of the unique Calibration
values that corresponds to the "Plasma" sample types' Calibration
for the tested compound
Plasma.df
Unique Dilution Factor
of the "Plasma" sample types for the tested compound
Plasma.rep
Integer representing "Plasma" replicate group for the tested compound
waters2008validationinvitroTKstats
\insertRefsmeltz2023plasmainvitroTKstats
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