island: Stochastic Island Biogeography Theory Made Easy

Tools to develop stochastic models based on the Theory of Island Biogeography (TIB) of MacArthur and Wilson (1967) <DOI:10.1023/A:1016393430551> and extensions. The package implements methods to estimate colonization and extinction rates (including environmental variables) given presence-absence data, simulate community assembly, and perform model selection.

Author
Vicente Jimenez [aut, cre], David Alonso [aut]
Date of publication
2016-04-06 18:18:53
Maintainer
Vicente Jimenez <vicente.jimenez.ontiveros@gmail.com>
License
GPL-3
Version
0.1.2

View on CRAN

Man pages

akaikeic
Akaike Information Criterium
all_environmental_fit
Environmental fit for a single dataset
alonso
Lakshadweep Archipelago coral fish community reassembly
cetotrans
From rates to probabilities
data_generation
Data simulation of colonization-extinction dynamics
idaho
Mapped plant community time series, Dubois, ID
irregular_multiple_datasets
c/e rates for irregular samplings in multiple datasets
irregular_single_dataset
c/e rates for irregular samplings in a dataset
island
island: Stochastic Island Biogeography Theory Made Easy
rates_calculator
Colonization and extinction rates calculator for expressions.
regular_sampling_scheme
c/e rates for a regular sampling scheme
r_squared
Model prediction error
simberloff
Simberloff and Wilson original defaunation experiment data
weight_of_evidence
Weight of evidence

Files in this package

island
island/NAMESPACE
island/data
island/data/alonso.RData
island/data/idaho.RData
island/data/simberloff.RData
island/R
island/R/alonso.R
island/R/NullModel.R
island/R/RatesToProbabilities.R
island/R/EnvironmentalFit.R
island/R/island.R
island/R/EvaluationCriteria.R
island/R/DataSimulation.R
island/R/RegularSamplingTimes.R
island/R/idaho.R
island/R/IrregularSamplingTimes.R
island/R/simberloff.R
island/MD5
island/DESCRIPTION
island/man
island/man/irregular_single_dataset.Rd
island/man/data_generation.Rd
island/man/akaikeic.Rd
island/man/idaho.Rd
island/man/alonso.Rd
island/man/rates_calculator.Rd
island/man/regular_sampling_scheme.Rd
island/man/all_environmental_fit.Rd
island/man/weight_of_evidence.Rd
island/man/cetotrans.Rd
island/man/r_squared.Rd
island/man/irregular_multiple_datasets.Rd
island/man/island.Rd
island/man/simberloff.Rd