API for landsepi
Landscape Epidemiology and Evolution
| Global functions | |
|---|---|
| .onAttach | Source code |
| AgriLand | Man page Source code |
| CroptypeBDD2Params | Source code |
| CultivarBDD2Params | Source code |
| CultivarGeneBDD2Params | Source code |
| Cultivars_list | Man page |
| GPKGAddInputData | Source code |
| GPKGAddTables | Source code |
| GeneBDD2Params | Source code |
| LandsepiParams | Man page |
| LandsepiParams-class | Man page |
| allocateCroptypeCultivars | Man page Source code |
| allocateCultivarGenes | Man page Source code |
| allocateLandscapeCroptypes | Man page Source code |
| antideriv_verhulst | Man page Source code |
| checkCroptypes | Man page Source code |
| checkCultivars | Man page Source code |
| checkCultivarsGenes | Man page Source code |
| checkDispersalHost | Man page Source code |
| checkDispersalPathogen | Man page Source code |
| checkGenes | Man page Source code |
| checkInoculum | Man page Source code |
| checkLandscape | Man page Source code |
| checkOutputs | Man page Source code |
| checkPI0_mat | Man page Source code |
| checkPathogen | Man page Source code |
| checkSimulParams | Man page Source code |
| checkTime | Man page Source code |
| checkTreatment | Man page Source code |
| compute_audpc100S | Man page Source code |
| createLandscapeGPKG | Source code |
| createSimulParams | Man page Source code |
| demo_landsepi | Man page Source code |
| dispP | Man page |
| dispP_1 | Man page |
| dispP_2 | Man page |
| dispP_3 | Man page |
| dispP_4 | Man page |
| dispP_5 | Man page |
| epid_output | Man page Source code |
| evol_output | Man page Source code |
| getGPKGArea | Source code |
| getGPKGCroptypes | Source code |
| getGPKGCroptypesRaw | Source code |
| getGPKGCultivars | Source code |
| getGPKGCultivarsGenes | Source code |
| getGPKGGeneIDForCultivar | Source code |
| getGPKGGenes | Source code |
| getGPKGRotation | Source code |
| getInfo | Source code |
| getMatrixCroptypePatho | Man page Source code |
| getMatrixCultivarPatho | Man page Source code |
| getMatrixGenePatho | Man page Source code |
| getMatrixPolyPatho | Man page Source code |
| initialize,LandsepiParams-method | Man page |
| inoculumToMatrix | Man page Source code |
| invlogit | Man page Source code |
| is.in.01 | Man page Source code |
| is.positive | Man page Source code |
| is.strict.positive | Man page Source code |
| is.wholenumber | Man page Source code |
| landscapeTEST | Man page |
| landscapeTEST1 | Man page |
| landscapeTEST2 | Man page |
| landscapeTEST3 | Man page |
| landscapeTEST4 | Man page |
| landscapeTEST5 | Man page |
| landsepi | Man page |
| landsepi-package | Man page |
| loadCroptypes | Man page Source code |
| loadCultivar | Man page Source code |
| loadDispersalHost | Man page Source code |
| loadDispersalPathogen | Man page Source code |
| loadGene | Man page Source code |
| loadInoculum | Man page Source code |
| loadLandscape | Man page Source code |
| loadOutputs | Man page Source code |
| loadPathogen | Man page Source code |
| loadSimulParams | Man page Source code |
| loadTreatment | Man page Source code |
| logit | Man page Source code |
| model_landsepi | Man page Source code |
| multiN | Man page Source code |
| params2CroptypeBDD | Source code |
| params2CultivarBDD | Source code |
| params2GeneBDD | Source code |
| params2GeneListBDD | Source code |
| periodic_cov | Man page Source code |
| plot_allocation | Man page Source code |
| plot_freqPatho | Man page Source code |
| plotland | Man page Source code |
| price_reduction | Man page Source code |
| Man page | |
| print,LandsepiParams-method | Man page |
| resetCultivarsGenes | Man page Source code |
| runShinyApp | Man page Source code |
| runSimul | Man page Source code |
| saveDeploymentStrategy | Man page Source code |
| setCroptypes | Man page Source code |
| setCultivars | Man page Source code |
| setDispersalHost | Man page Source code |
| setDispersalPathogen | Man page Source code |
| setGenes | Man page Source code |
| setInoculum | Man page Source code |
| setLandscape | Man page Source code |
| setLansdcape | Man page |
| setOutputs | Man page Source code |
| setPathogen | Man page Source code |
| setSeed | Man page Source code |
| setSeedValue | Man page Source code |
| setTime | Man page Source code |
| setTreatment | Man page Source code |
| show | Man page |
| show,LandsepiParams-method | Man page |
| simul_landsepi | Man page Source code |
| summary | Man page |
| summary,LandsepiParams-method | Man page |
| survivalProbToMatrix | Man page Source code |
| switch_patho_to_aggr | Man page Source code |
| updateReproSexProb | Man page Source code |
| updateSurvivalProb | Man page Source code |
| video | Man page Source code |
