API for latrend
A Framework for Clustering Longitudinal Data

Global functions
$,lcMethod-method Man page
.as_lang Source code
.checkPackageInstalled Source code
.defineInternalDistanceMetric Source code
.defineInternalDistanceMetrics Man page
.defineMetric Source code
.enterTimed Source code
.exitTimed Source code
.externalMetric.lcModels Source code
.fitLatrendMethod Source code
.formatElapsedSeconds Source code
.getMetricDef Source code
.lcModelStratify Source code
.loadOptionalPackage Source code
.ndobs Source code
.onLoad Source code
.postprob_GLMM_MCMC Source code
.predictForCluster_GLMM_MCMC Source code
.rowColumns Source code
.stratifyTrajectories Source code
.tic Source code
.toc Source code
.tocText Source code
.trajSubset Man page Source code
.wmmae Source code
.wmrss Source code
APPA Man page Source code
APPA.mean Source code
APPA.min Source code
ASW Source code
CAIC Source code
CLC Source code
CalinskiHarabasz Source code
CohensKappa Source code
DaviesBouldin Source code
Dunn Source code
F1 Source code
FolkesMallows Source code
Hubert Source code
ICL.BIC Source code
Jaccard Source code
Kulczynski Source code
MAE Source code
MI Source code
MSE Source code
MaximumMatch Source code
McNemar Source code
MeilaHeckerman Source code
Mirkin Source code
NMI Source code
NSJ Source code
NVI Source code
OCC Man page Source code
Overlap Source code
PAP.adh Man page
PAP.adh1y Man page
PD Source code
Phi Source code
REtermAsFormula Source code
RMSE Source code
RSS Source code
Rand Source code
RogersTanimoto Source code
RusselRao Source code
SMC Source code
SokalSneath1 Source code
SokalSneath2 Source code
VI Source code
WMAE Source code
WMMAE Source code
WMMAE.ref Source code
WMMSE Source code
WMMSE.ref Source code
WMRSS Source code
WMRSS.ref Source code
WMSE Source code
WRMSE Source code
WRSS Source code
Wallace1 Source code
Wallace2 Source code
[[,lcMethod-method Man page
_PACKAGE Man page
`%c%` Source code
`F` Source code
`[.lcModels` Source code
`clusterNames<-` Source code
addInteraction Source code
adjustedRand Source code
are_trajectories_equal_length Man page
are_trajectories_length Man page
as.Verbose Source code
as.character.lcMetaMethod Source code
as.data.frame.lcMethod Man page
as.data.frame.lcMethods Man page Source code
as.data.frame.lcModels Man page Source code
as.lcMethods Man page Source code
as.lcModels Man page Source code
as.list.lcMethod Man page
as.list.lcModels Source code
bootSample Man page Source code
canShow Source code
clusterNames Man page Source code
clusterNames<- Man page
clusterProportions Man page
clusterProportions,lcModel-method Man page
clusterSizes Man page Source code
clusterTrajectories Man page
clusterTrajectories,lcModel-method Man page
clusterTrajectories,lcModelKML-method Man page
clusterTrajectories,lcModelMclustLLPA-method Man page
clusterTrajectories,lcModelMixtoolsRM-method Man page
clusterTrajectories,lcModelPartition-method Man page
clusterTrajectories,lcModelWeightedPartition-method Man page
coef.GLMM_MCMC Source code
coef.lcModel Man page Source code
coef.lcModelCrimCV Man page Source code
coef.lcModelFlexmix Man page Source code
coef.lcModelFunFEM Man page Source code
coef.lcModelLMKM Man page Source code
coef.lcModelMixAK_GLMM Man page Source code
coef.lcModelMixAK_GLMMlist Source code
coef.lcModelMixTVEM Man page Source code
coef.lcModelMixtoolsGMM Man page
compose Man page
compose,lcMetaMethod-method Man page
compose,lcMethod-method Man page
compose,lcMethodMclustLLPA-method Man page
compose,lcMethodStratify-method Man page
confusionMatrix Man page Source code
converged Man page Source code
converged,lcModel-method Man page
converged,lcModelCrimCV-method Man page
converged,lcModelDtwclust-method Man page
converged,lcModelFlexmix-method Man page
converged,lcModelFunFEM-method Man page
converged,lcModelKML-method Man page
converged,lcModelLMKM-method Man page
converged,lcModelLcmmGMM-method Man page
converged,lcModelMclustLLPA-method Man page
converged,lcModelMixTVEM-method Man page
converged,lcModelMixtoolsRM-method Man page
converged,lcModelPartition-method Man page
converged,lcModelStratify-method Man page
converged,lcModelWeightedPartition-method Man page
createTestDataFold Man page Source code
createTestDataFolds Man page Source code
createTrainDataFolds Man page Source code
dcastRepeatedMeasures Man page
defineExternalMetric Man page Source code
defineInternalMetric Man page Source code
deviance.GLMM_MCMC Source code
deviance.lcModel Man page Source code
deviance.lcModelMixAK_GLMM Man page Source code
deviance.lcModelMixAK_GLMMlist Source code
df.residual.lcModel Man page Source code
dropResponse Source code
entropy Source code
estimationTime Man page
estimationTime,lcModel-method Man page
estimationTime,lcModels-method Man page
estimationTime,list-method Man page
evaluate.lcMethod Man page
externalMetric Man page
externalMetric,lcModel,lcModel-method Man page
externalMetric,lcModels,character-method Man page
externalMetric,lcModels,lcModel-method Man page
externalMetric,lcModels,lcModels-method Man page
externalMetric,lcModels,missing-method Man page
externalMetric,list,lcModel-method Man page
fit Man page
fit,lcFitConverged-method Man page
fit,lcFitRep-method Man page
fit,lcMetaMethod-method Man page
fit,lcMethod-method Man page
fit,lcMethodAkmedoids-method Man page
fit,lcMethodCrimCV-method Man page
fit,lcMethodDtwclust-method Man page
fit,lcMethodFeature-method Man page
fit,lcMethodFlexmix-method Man page
fit,lcMethodFunFEM-method Man page
fit,lcMethodFunction-method Man page
fit,lcMethodKML-method Man page
fit,lcMethodLMKM-method Man page
fit,lcMethodLcmmGBTM-method Man page
fit,lcMethodLcmmGMM-method Man page
fit,lcMethodMclustLLPA-method Man page
fit,lcMethodMixAK_GLMM-method Man page
fit,lcMethodMixTVEM-method Man page
fit,lcMethodMixtoolsGMM-method Man page
fit,lcMethodMixtoolsNPRM-method Man page
fit,lcMethodRandom-method Man page
fit,lcMethodStratify-method Man page
fitted.lcApproxModel Man page Source code
fitted.lcModel Man page Source code
fitted.lcModelFlexmix Man page Source code
fitted.lcModelFunFEM Man page Source code
fitted.lcModelLcmmGMM Man page Source code
fittedTrajectories Man page
fittedTrajectories,lcModel-method Man page
formula.lcMethod Man page
formula.lcModel Man page Source code
generateLongData Man page Source code
getArgumentDefaults Man page
getArgumentDefaults,lcMethod-method Man page
getArgumentDefaults,lcMethodAkmedoids-method Man page
getArgumentDefaults,lcMethodCrimCV-method Man page
getArgumentDefaults,lcMethodDtwclust-method Man page
getArgumentDefaults,lcMethodFeature-method Man page
getArgumentDefaults,lcMethodFlexmix-method Man page
getArgumentDefaults,lcMethodFlexmixGBTM-method Man page
getArgumentDefaults,lcMethodFunFEM-method Man page
getArgumentDefaults,lcMethodFunction-method Man page
getArgumentDefaults,lcMethodGCKM-method Man page
getArgumentDefaults,lcMethodKML-method Man page
getArgumentDefaults,lcMethodLMKM-method Man page
getArgumentDefaults,lcMethodLcmmGBTM-method Man page
getArgumentDefaults,lcMethodLcmmGMM-method Man page
getArgumentDefaults,lcMethodMclustLLPA-method Man page
getArgumentDefaults,lcMethodMixAK_GLMM-method Man page
getArgumentDefaults,lcMethodMixTVEM-method Man page
getArgumentDefaults,lcMethodMixtoolsGMM-method Man page
getArgumentDefaults,lcMethodMixtoolsNPRM-method Man page
getArgumentDefaults,lcMethodRandom-method Man page
getArgumentDefaults,lcMethodStratify-method Man page
getArgumentExclusions Man page
getArgumentExclusions,lcMethod-method Man page
getArgumentExclusions,lcMethodAkmedoids-method Man page
getArgumentExclusions,lcMethodCrimCV-method Man page
getArgumentExclusions,lcMethodDtwclust-method Man page
getArgumentExclusions,lcMethodFlexmix-method Man page
getArgumentExclusions,lcMethodFlexmixGBTM-method Man page
getArgumentExclusions,lcMethodFunFEM-method Man page
getArgumentExclusions,lcMethodGCKM-method Man page
getArgumentExclusions,lcMethodKML-method Man page
getArgumentExclusions,lcMethodLMKM-method Man page
getArgumentExclusions,lcMethodLcmmGBTM-method Man page
getArgumentExclusions,lcMethodLcmmGMM-method Man page
getArgumentExclusions,lcMethodMclustLLPA-method Man page
getArgumentExclusions,lcMethodMixAK_GLMM-method Man page
getArgumentExclusions,lcMethodMixTVEM-method Man page
getArgumentExclusions,lcMethodMixtoolsGMM-method Man page
getArgumentExclusions,lcMethodMixtoolsNPRM-method Man page
getCall.lcMetaMethod Source code
getCall.lcModel Man page Source code
getCovariates Source code
getExternalMetricDefinition Man page Source code
getExternalMetricNames Man page Source code
getGLMM_MCMCs Source code
getInternalMetricDefinition Man page Source code
getInternalMetricNames Man page Source code
getLabel Man page
getLabel,lcMethod-method Man page
getLabel,lcModel-method Man page
getLcMethod Man page
getLcMethod,lcMetaMethod-method Man page
getLcMethod,lcModel-method Man page
getName Man page
getName,NULL-method Man page
getName,lcMatrixMethod-method Man page
getName,lcMetaMethod-method Man page
getName,lcMethod-method Man page
getName,lcMethodAkmedoids-method Man page
getName,lcMethodCrimCV-method Man page
getName,lcMethodDtwclust-method Man page
getName,lcMethodFeature-method Man page
getName,lcMethodFlexmix-method Man page
getName,lcMethodFlexmixGBTM-method Man page
getName,lcMethodFunFEM-method Man page
getName,lcMethodFunction-method Man page
getName,lcMethodGCKM-method Man page
getName,lcMethodKML-method Man page
getName,lcMethodLMKM-method Man page
getName,lcMethodLcmmGBTM-method Man page
getName,lcMethodLcmmGMM-method Man page
getName,lcMethodMclustLLPA-method Man page
getName,lcMethodMixAK_GLMM-method Man page
getName,lcMethodMixTVEM-method Man page
getName,lcMethodMixtoolsGMM-method Man page
getName,lcMethodMixtoolsNPRM-method Man page
getName,lcMethodRandom-method Man page
getName,lcMethodStratify-method Man page
getName,lcModel-method Man page
getName,lcModelPartition-method Man page
getName,lcModelWeightedPartition-method Man page
getREGroupName Source code
getREterms Source code
getResponse Source code
getShortName Man page
getShortName,NULL-method Man page
getShortName,lcMatrixMethod-method Man page
getShortName,lcMetaMethod-method Man page
getShortName,lcMethod-method Man page
getShortName,lcMethodAkmedoids-method Man page
getShortName,lcMethodCrimCV-method Man page
getShortName,lcMethodDtwclust-method Man page
getShortName,lcMethodFeature-method Man page
getShortName,lcMethodFlexmix-method Man page
getShortName,lcMethodFlexmixGBTM-method Man page
getShortName,lcMethodFunFEM-method Man page
getShortName,lcMethodFunction-method Man page
getShortName,lcMethodGCKM-method Man page
getShortName,lcMethodKML-method Man page
getShortName,lcMethodLMKM-method Man page
getShortName,lcMethodLcmmGBTM-method Man page
getShortName,lcMethodLcmmGMM-method Man page
getShortName,lcMethodMclustLLPA-method Man page
getShortName,lcMethodMixAK_GLMM-method Man page
getShortName,lcMethodMixTVEM-method Man page
getShortName,lcMethodMixtoolsGMM-method Man page
getShortName,lcMethodMixtoolsNPRM-method Man page
getShortName,lcMethodRandom-method Man page
getShortName,lcMethodStratify-method Man page
getShortName,lcModel-method Man page
getShortName,lcModelPartition-method Man page
getShortName,lcModelWeightedPartition-method Man page
gmm_fit Source code
gmm_gridsearch Source code
gmm_prepare Source code
hasCovariates Source code
hasIntercept Source code
hasRE Source code
hasResponse Source code
hasSingleResponse Source code
has_colnames Source code
has_lcMethod_args Man page Source code
has_same_ids Source code
has_same_modelData Source code
have_trajectories_noNA Man page
idVariable Man page
idVariable,lcMetaMethod-method Man page
idVariable,lcMethod-method Man page
idVariable,lcModel-method Man page
ids Man page Source code
initialize,lcMethod-method Man page
interface-akmedoids Man page
interface-crimCV Man page
interface-custom Man page
interface-dtwclust Man page
interface-featureBased Man page
interface-flexmix Man page
interface-funFEM Man page
interface-kml Man page
interface-lcmm Man page
interface-mclust Man page
interface-metaMethods Man page
interface-mixAK Man page
interface-mixtools Man page
interface-mixtvem Man page
internalMetric Man page
is.formula Source code
is.lcMethod Man page
is.lcModel Man page Source code
is.lcModels Man page Source code
isArgDefined Man page
is_at Source code
is_class_defined Source code
is_data Man page Source code
is_named Source code
is_newdata Source code
is_valid_cluster_name Source code
is_valid_postprob Man page Source code
jointEntropy Source code
latrend Man page Source code
latrend-approaches Man page
latrend-assert Man page
latrend-data Man page
latrend-estimation Man page
latrend-generics Man page
latrend-is Man page
latrend-methods Man page
latrend-metrics Man page
latrend-package Man page
latrend-parallel Man page
latrend-procedure Man page
latrendBatch Man page Source code
latrendBoot Man page Source code
latrendCV Man page Source code
latrendData Man page
latrendRep Man page Source code
lcApproxModel Man page
lcApproxModel-class Man page
lcFitConverged Man page Source code
lcFitConverged-class Man page
lcFitMethods Man page
lcFitRep Man page Source code
lcFitRep-class Man page
lcFitRepMax Man page Source code
lcFitRepMin Man page Source code
lcMatrixMethod-class Man page
lcMetaMethod-class Man page
lcMetaMethods Man page
lcMethod Man page
lcMethod-class Man page
lcMethod-estimation Man page
lcMethod-steps Man page
lcMethodAkmedoids Man page Source code
lcMethodCrimCV Man page Source code
lcMethodDtwclust Man page Source code
lcMethodFeature Man page Source code
lcMethodFlexmix Man page Source code
lcMethodFlexmixGBTM Man page Source code
lcMethodFunFEM Man page Source code
lcMethodFunction Man page Source code
lcMethodGCKM Man page Source code
lcMethodKML Man page Source code
lcMethodLMKM Man page Source code
lcMethodLcmmGBTM Man page Source code
lcMethodLcmmGMM Man page Source code
lcMethodMclustLLPA Man page Source code
lcMethodMixAK_GLMM Man page Source code
lcMethodMixTVEM Man page Source code
lcMethodMixtoolsGMM Man page Source code
lcMethodMixtoolsNPRM Man page Source code
lcMethodRandom Man page Source code
lcMethodStratify Man page Source code
lcMethods Man page Source code
lcModel Man page
lcModel-class Man page
lcModel-data-filters Man page
lcModel-make Man page
lcModelKML-class Man page
lcModelPartition Man page Source code
lcModelWeightedPartition Man page Source code
lcModels Man page Source code
lcModels-class Man page
length,lcMethod-method Man page
localRNG Source code
logLik.lcModel Man page Source code
logLik.lcModelCrimCV Man page Source code
logLik.lcModelFlexmix Man page Source code
logLik.lcModelFunFEM Man page Source code
logLik.lcModelKML Man page Source code
logLik.lcModelLMKM Man page Source code
logLik.lcModelLcmmGMM Man page
logLik.lcModelMixTVEM Man page Source code
logLik.lcModelMixtoolsGMM Man page
logLik.lcModelMixtoolsRM Man page
make.clusterIndices Man page Source code
make.clusterNames Man page Source code
make.idRowIndices Source code
make.ids Source code
make.trajectoryAssignments Man page Source code
match.call.all Man page
max.lcModels Man page
meanNA Man page
meltRepeatedMeasures Man page
merge.formula Source code
metric Man page
metric,lcModel-method Man page
metric,lcModels-method Man page
metric,list-method Man page
min.lcModels Man page
model.data Man page Source code
model.data.lcModel Man page Source code
model.frame.lcModel Man page Source code
model.matrix.lcModelLcmmGMM Man page
nClusters Man page
nClusters,lcModel-method Man page
nIds Man page Source code
names,lcMethod-method Man page
no_empty_trajectories Man page Source code
no_trajectories_allNA Man page
no_trajectories_duplicate_time Man page Source code
nobs.lcModel Man page Source code
nobs.lcModelLcmmGMM Man page
plot,lcModel,ANY-method Man page
plot,lcModel-method Man page
plot,lcModels,ANY-method Man page
plot,lcModels-method Man page
plot-lcModel-method Man page
plot-lcModels-method Man page
plotClusterTrajectories Man page
plotClusterTrajectories,data.frame-method Man page
plotClusterTrajectories,lcModel-method Man page
plotFittedTrajectories Man page
plotFittedTrajectories,lcModel-method Man page
plotMetric Man page
plotTrajectories Man page
plotTrajectories,ANY-method Man page
plotTrajectories,data.frame-method Man page
plotTrajectories,lcModel-method Man page
postFit Man page
postFit,lcMetaMethod-method Man page
postFit,lcMethod-method Man page
postProbFromObs Man page Source code
postprob Man page
postprob,lcModel-method Man page
postprob,lcModelCrimCV-method Man page
postprob,lcModelDtwclust-method Man page
postprob,lcModelFlexmix-method Man page
postprob,lcModelFunFEM-method Man page
postprob,lcModelKML-method Man page
postprob,lcModelLMKM-method Man page
postprob,lcModelLcmmGMM-method Man page
postprob,lcModelMclustLLPA-method Man page
postprob,lcModelMixAK_GLMM-method Man page
postprob,lcModelMixAK_GLMMlist-method Man page
postprob,lcModelMixTVEM-method Man page
postprob,lcModelMixtoolsGMM-method Man page
postprob,lcModelMixtoolsRM-method Man page
postprob,lcModelPartition-method Man page
postprob,lcModelWeightedPartition-method Man page
postprobFromAssignments Man page
preFit Man page
preFit,lcMetaMethod-method Man page
preFit,lcMethod-method Man page
preFit,lcMethodDtwclust-method Man page
preFit,lcMethodFlexmix-method Man page
preFit,lcMethodFlexmixGBTM-method Man page
preFit,lcMethodFunFEM-method Man page
preFit,lcMethodKML-method Man page
preFit,lcMethodLcmmGBTM-method Man page
preFit,lcMethodLcmmGMM-method Man page
preFit,lcMethodMixAK_GLMM-method Man page
preFit,lcMethodMixTVEM-method Man page
preFit,lcMethodMixtoolsGMM-method Man page
precision Source code
predict.lcModel Man page Source code
predict.lcModelMixTVEM Man page Source code
predictAssignments Man page
predictAssignments,lcModel-method Man page
predictForCluster Man page
predictForCluster,lcApproxModel-method Man page
predictForCluster,lcModel-method Man page
predictForCluster,lcModelCrimCV-method Man page
predictForCluster,lcModelDtwclust-method Man page
predictForCluster,lcModelFlexmix-method Man page
predictForCluster,lcModelFunFEM-method Man page
predictForCluster,lcModelLcmmGMM-method Man page
predictForCluster,lcModelMixAK_GLMM-method Man page
predictForCluster,lcModelMixAK_GLMMlist-method Man page
predictForCluster,lcModelMixtoolsGMM-method Man page
predictPostprob Man page
predictPostprob,lcModel-method Man page
predictPostprob,lcModelKML-method Man page
predictPostprob,lcModelMclustLLPA-method Man page
predictPostprob,lcModelStratify-method Man page
prepareData Man page
prepareData,lcMatrixMethod-method Man page
prepareData,lcMetaMethod-method Man page
prepareData,lcMethod-method Man page
prepareData,lcMethodCrimCV-method Man page
prepareData,lcMethodFeature-method Man page
prepareData,lcMethodFunction-method Man page
prepareData,lcMethodGCKM-method Man page
prepareData,lcMethodLMKM-method Man page
prepareData,lcMethodMclustLLPA-method Man page
print.lcMethod Man page
print.lcModels Man page
qqPlot Man page
qqPlot,lcModel-method Man page
range Source code
recall Source code
relativeEntropy Source code
residuals.lcModel Man page Source code
responseVariable Man page
responseVariable,lcMetaMethod-method Man page
responseVariable,lcMethod-method Man page
responseVariable,lcMethodLcmmGBTM-method Man page
responseVariable,lcMethodLcmmGMM-method Man page
responseVariable,lcMethodMixAK_GLMM-method Man page
responseVariable,lcModel-method Man page
sd Source code
se Source code
sigma.lcModel Man page Source code
sigma.lcModelLcmmGMM Man page
sigma.lcModelMixTVEM Man page Source code
sigma.lcModelMixtoolsGMM Man page
splitJoin Source code
splitJoin.ref Source code
ssBIC Source code
standardizeTrajectoryCoefMatrix Source code
strip Man page
strip,ANY-method Man page
strip,lcMethod-method Man page
strip,lcModel-method Man page
subset.lcModels Man page
summary.lcModel Man page Source code
test Man page Source code
test.latrend Man page Source code
testFold Man page Source code
time.lcModel Man page Source code
timeVariable Man page
timeVariable,lcMetaMethod-method Man page
timeVariable,lcMethod-method Man page
timeVariable,lcModel-method Man page
trainFold Man page Source code
trajectories Man page
trajectories,call-method Man page
trajectories,data.frame-method Man page
trajectories,lcModel-method Man page
trajectories,matrix-method Man page
trajectoryAssignments Man page
trajectoryAssignments,lcModel-method Man page
trajectoryAssignments,matrix-method Man page
transformFitted Man page
transformFitted,NULL,lcModel-method Man page
transformFitted,data.frame,lcModel-method Man page
transformFitted,list,lcModel-method Man page
transformFitted,matrix,lcModel-method Man page
transformPredict Man page
transformPredict,NULL,lcModel-method Man page
transformPredict,data.frame,lcModel-method Man page
transformPredict,matrix,lcModel-method Man page
transformPredict,vector,lcModel-method Man page
tsframe Man page Source code
tsmatrix Man page Source code
update.lcMetaMethod Man page Source code
update.lcMethod Man page
update.lcModel Man page Source code
validate Man page
validate,lcFitConverged-method Man page
validate,lcFitRep-method Man page
validate,lcMetaMethod-method Man page
validate,lcMethod-method Man page
validate,lcMethodLMKM-method Man page
validate,lcMethodLcmmGMM-method Man page
warn_that Source code
weighted.meanNA Man page
which.weight Man page Source code
latrend documentation built on March 31, 2023, 5:45 p.m.