localScore: Package for Sequence Analysis by Local Score

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.archives-ouvertes.fr/hal-00714174> ; S. Karlin and S. Altschul (1990) <https://www.pnas.org/content/87/6/2264> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.archives-ouvertes.fr/hal-00937529v1> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

Package details

AuthorSebastian Simon [aut], David Robelin [aut, cre], Sabine Mercier [aut], Sebastien Dejean [aut], The authors of Eigen the library for the included version of Eigen [cph]
MaintainerDavid Robelin <david.robelin@inrae.fr>
LicenseGPL (>= 2) | file LICENSE
Version1.0.6
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("localScore")

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localScore documentation built on Feb. 25, 2021, 1:05 a.m.