Files in localScore

Package for Sequence Analysis by Local Score

MD5

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/data.R R/rMethods.R

src/pValueMethods.h

src/RcppExports.cpp

src/function_wrapper.cpp

src/localScoreC.cpp

src/pValueMethods.cpp

src/Eigen/IterativeLinearSolvers

src/Eigen/SparseCholesky

src/Eigen/SparseCore

src/Eigen/Eigenvalues

src/Eigen/OrderingMethods

src/Eigen/Jacobi

src/Eigen/UmfPackSupport

src/Eigen/SVD

src/Eigen/SPQRSupport

src/Eigen/SuperLUSupport

src/Eigen/LU

src/Eigen/Eigen

src/Eigen/SparseLU

src/Eigen/Dense

src/Eigen/CholmodSupport

src/Eigen/Geometry

src/Eigen/PardisoSupport

src/Eigen/MetisSupport

src/Eigen/QR

src/Eigen/SparseQR

src/Eigen/Cholesky

src/Eigen/KLUSupport

src/Eigen/Core

src/Eigen/PaStiXSupport

src/Eigen/StdDeque

src/Eigen/Householder

src/Eigen/Sparse

src/Eigen/StdVector

src/Eigen/QtAlignedMalloc

src/Eigen/StdList

src/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h

src/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h

src/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h

src/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h

src/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h

src/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h

src/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h

src/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h

src/Eigen/src/misc/lapack.h

src/Eigen/src/misc/lapacke.h

src/Eigen/src/misc/lapacke_mangling.h

src/Eigen/src/misc/Image.h

src/Eigen/src/misc/blas.h

src/Eigen/src/misc/Kernel.h

src/Eigen/src/misc/RealSvd2x2.h

src/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h

src/Eigen/src/SparseCholesky/SimplicialCholesky.h

src/Eigen/src/SparseCore/SparseMatrix.h

src/Eigen/src/SparseCore/SparseVector.h

src/Eigen/src/SparseCore/SparseMatrixBase.h

src/Eigen/src/SparseCore/SparseSelfAdjointView.h

src/Eigen/src/SparseCore/SparseRef.h

src/Eigen/src/SparseCore/SparseAssign.h

src/Eigen/src/SparseCore/SparseMap.h

src/Eigen/src/SparseCore/TriangularSolver.h

src/Eigen/src/SparseCore/SparseTriangularView.h

src/Eigen/src/SparseCore/SparseCwiseUnaryOp.h

src/Eigen/src/SparseCore/SparseSparseProductWithPruning.h

src/Eigen/src/SparseCore/AmbiVector.h

src/Eigen/src/SparseCore/SparsePermutation.h

src/Eigen/src/SparseCore/SparseTranspose.h

src/Eigen/src/SparseCore/SparseRedux.h

src/Eigen/src/SparseCore/CompressedStorage.h

src/Eigen/src/SparseCore/SparseBlock.h

src/Eigen/src/SparseCore/SparseSolverBase.h

src/Eigen/src/SparseCore/SparseColEtree.h

src/Eigen/src/SparseCore/SparseDenseProduct.h

src/Eigen/src/SparseCore/SparseCwiseBinaryOp.h

src/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h

src/Eigen/src/SparseCore/SparseUtil.h

src/Eigen/src/SparseCore/SparseDot.h

src/Eigen/src/SparseCore/SparseCompressedBase.h

src/Eigen/src/SparseCore/SparseFuzzy.h

src/Eigen/src/SparseCore/SparseProduct.h

src/Eigen/src/SparseCore/MappedSparseMatrix.h

src/Eigen/src/SparseCore/SparseDiagonalProduct.h

src/Eigen/src/SparseCore/SparseView.h

src/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h

src/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h

src/Eigen/src/Eigenvalues/RealQZ.h

src/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h

src/Eigen/src/Eigenvalues/ComplexSchur.h

src/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h

src/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h

src/Eigen/src/Eigenvalues/RealSchur.h

src/Eigen/src/Eigenvalues/ComplexEigenSolver.h

src/Eigen/src/Eigenvalues/EigenSolver.h

src/Eigen/src/Eigenvalues/Tridiagonalization.h

src/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h

src/Eigen/src/Eigenvalues/HessenbergDecomposition.h

src/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h

src/Eigen/src/OrderingMethods/Amd.h

src/Eigen/src/OrderingMethods/Eigen_Colamd.h

src/Eigen/src/OrderingMethods/Ordering.h

src/Eigen/src/Jacobi/Jacobi.h

src/Eigen/src/UmfPackSupport/UmfPackSupport.h

src/Eigen/src/SVD/SVDBase.h

src/Eigen/src/SVD/UpperBidiagonalization.h

src/Eigen/src/SVD/BDCSVD.h

src/Eigen/src/SVD/JacobiSVD_LAPACKE.h

src/Eigen/src/SVD/JacobiSVD.h

src/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h

src/Eigen/src/SuperLUSupport/SuperLUSupport.h

src/Eigen/src/LU/InverseImpl.h

src/Eigen/src/LU/PartialPivLU_LAPACKE.h

src/Eigen/src/LU/PartialPivLU.h

src/Eigen/src/LU/FullPivLU.h

src/Eigen/src/LU/Determinant.h

src/Eigen/src/LU/arch/InverseSize4.h

src/Eigen/src/SparseLU/SparseLU_pivotL.h

src/Eigen/src/SparseLU/SparseLU_pruneL.h

src/Eigen/src/SparseLU/SparseLU_kernel_bmod.h

src/Eigen/src/SparseLU/SparseLU.h

src/Eigen/src/SparseLU/SparseLU_panel_dfs.h

src/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h

src/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h

src/Eigen/src/SparseLU/SparseLU_relax_snode.h

src/Eigen/src/SparseLU/SparseLU_column_dfs.h

src/Eigen/src/SparseLU/SparseLU_panel_bmod.h

src/Eigen/src/SparseLU/SparseLU_Structs.h

src/Eigen/src/SparseLU/SparseLU_Memory.h

src/Eigen/src/SparseLU/SparseLUImpl.h

src/Eigen/src/SparseLU/SparseLU_Utils.h

src/Eigen/src/SparseLU/SparseLU_column_bmod.h

src/Eigen/src/SparseLU/SparseLU_gemm_kernel.h

src/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h

src/Eigen/src/CholmodSupport/CholmodSupport.h

src/Eigen/src/StlSupport/StdDeque.h

src/Eigen/src/StlSupport/StdVector.h

src/Eigen/src/StlSupport/StdList.h

src/Eigen/src/StlSupport/details.h

src/Eigen/src/Geometry/EulerAngles.h

src/Eigen/src/Geometry/Translation.h

src/Eigen/src/Geometry/RotationBase.h

src/Eigen/src/Geometry/Homogeneous.h

src/Eigen/src/Geometry/AngleAxis.h

src/Eigen/src/Geometry/OrthoMethods.h

src/Eigen/src/Geometry/ParametrizedLine.h

src/Eigen/src/Geometry/Transform.h

src/Eigen/src/Geometry/Hyperplane.h

src/Eigen/src/Geometry/Umeyama.h

src/Eigen/src/Geometry/Quaternion.h

src/Eigen/src/Geometry/Scaling.h

src/Eigen/src/Geometry/AlignedBox.h

src/Eigen/src/Geometry/Rotation2D.h

src/Eigen/src/Geometry/arch/Geometry_SIMD.h

src/Eigen/src/PardisoSupport/PardisoSupport.h

src/Eigen/src/MetisSupport/MetisSupport.h

src/Eigen/src/QR/CompleteOrthogonalDecomposition.h

src/Eigen/src/QR/ColPivHouseholderQR.h

src/Eigen/src/QR/HouseholderQR.h

src/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h

src/Eigen/src/QR/FullPivHouseholderQR.h

src/Eigen/src/QR/HouseholderQR_LAPACKE.h

src/Eigen/src/plugins/ArrayCwiseBinaryOps.h

src/Eigen/src/plugins/MatrixCwiseBinaryOps.h

src/Eigen/src/plugins/MatrixCwiseUnaryOps.h

src/Eigen/src/plugins/CommonCwiseUnaryOps.h

src/Eigen/src/plugins/BlockMethods.h

src/Eigen/src/plugins/ReshapedMethods.h

src/Eigen/src/plugins/CommonCwiseBinaryOps.h

src/Eigen/src/plugins/IndexedViewMethods.h

src/Eigen/src/plugins/ArrayCwiseUnaryOps.h

src/Eigen/src/SparseQR/SparseQR.h

src/Eigen/src/Cholesky/LLT.h

src/Eigen/src/Cholesky/LDLT.h

src/Eigen/src/Cholesky/LLT_LAPACKE.h

src/Eigen/src/KLUSupport/KLUSupport.h

src/Eigen/src/Core/PlainObjectBase.h

src/Eigen/src/Core/Random.h

src/Eigen/src/Core/Diagonal.h

src/Eigen/src/Core/ForceAlignedAccess.h

src/Eigen/src/Core/PermutationMatrix.h

src/Eigen/src/Core/Transpose.h

src/Eigen/src/Core/CommaInitializer.h

src/Eigen/src/Core/IO.h

src/Eigen/src/Core/CwiseBinaryOp.h

src/Eigen/src/Core/CoreEvaluators.h

src/Eigen/src/Core/Solve.h

src/Eigen/src/Core/Reverse.h

src/Eigen/src/Core/ArrayBase.h

src/Eigen/src/Core/Stride.h

src/Eigen/src/Core/CwiseTernaryOp.h

src/Eigen/src/Core/SelfAdjointView.h

src/Eigen/src/Core/Block.h

src/Eigen/src/Core/CwiseNullaryOp.h

src/Eigen/src/Core/DiagonalMatrix.h

src/Eigen/src/Core/ArithmeticSequence.h

src/Eigen/src/Core/DenseBase.h

src/Eigen/src/Core/MapBase.h

src/Eigen/src/Core/ConditionEstimator.h

src/Eigen/src/Core/Fuzzy.h

src/Eigen/src/Core/MathFunctions.h

src/Eigen/src/Core/BooleanRedux.h

src/Eigen/src/Core/NumTraits.h

src/Eigen/src/Core/IndexedView.h

src/Eigen/src/Core/ArrayWrapper.h

src/Eigen/src/Core/Ref.h

src/Eigen/src/Core/TriangularMatrix.h

src/Eigen/src/Core/Product.h

src/Eigen/src/Core/Assign_MKL.h

src/Eigen/src/Core/NestByValue.h

src/Eigen/src/Core/DenseStorage.h

src/Eigen/src/Core/ProductEvaluators.h

src/Eigen/src/Core/VectorwiseOp.h

src/Eigen/src/Core/GlobalFunctions.h

src/Eigen/src/Core/CwiseUnaryView.h

src/Eigen/src/Core/CoreIterators.h

src/Eigen/src/Core/Replicate.h

src/Eigen/src/Core/VectorBlock.h

src/Eigen/src/Core/AssignEvaluator.h

src/Eigen/src/Core/BandMatrix.h

src/Eigen/src/Core/Reshaped.h

src/Eigen/src/Core/DenseCoeffsBase.h

src/Eigen/src/Core/PartialReduxEvaluator.h

src/Eigen/src/Core/SolverBase.h

src/Eigen/src/Core/Select.h

src/Eigen/src/Core/GeneralProduct.h

src/Eigen/src/Core/Dot.h

src/Eigen/src/Core/DiagonalProduct.h

src/Eigen/src/Core/SelfCwiseBinaryOp.h

src/Eigen/src/Core/Matrix.h

src/Eigen/src/Core/Array.h

src/Eigen/src/Core/MathFunctionsImpl.h

src/Eigen/src/Core/CwiseUnaryOp.h

src/Eigen/src/Core/Transpositions.h

src/Eigen/src/Core/GenericPacketMath.h

src/Eigen/src/Core/StlIterators.h

src/Eigen/src/Core/SolveTriangular.h

src/Eigen/src/Core/Inverse.h

src/Eigen/src/Core/Visitor.h

src/Eigen/src/Core/Assign.h

src/Eigen/src/Core/Redux.h

src/Eigen/src/Core/Swap.h

src/Eigen/src/Core/MatrixBase.h

src/Eigen/src/Core/EigenBase.h

src/Eigen/src/Core/StableNorm.h

src/Eigen/src/Core/NoAlias.h

src/Eigen/src/Core/Map.h

src/Eigen/src/Core/ReturnByValue.h

src/Eigen/src/Core/util/Memory.h

src/Eigen/src/Core/util/SymbolicIndex.h

src/Eigen/src/Core/util/IntegralConstant.h

src/Eigen/src/Core/util/Constants.h

src/Eigen/src/Core/util/ConfigureVectorization.h

src/Eigen/src/Core/util/ForwardDeclarations.h

src/Eigen/src/Core/util/BlasUtil.h

src/Eigen/src/Core/util/Meta.h

src/Eigen/src/Core/util/MKL_support.h

src/Eigen/src/Core/util/StaticAssert.h

src/Eigen/src/Core/util/Macros.h

src/Eigen/src/Core/util/IndexedViewHelper.h

src/Eigen/src/Core/util/DisableStupidWarnings.h

src/Eigen/src/Core/util/NonMPL2.h

src/Eigen/src/Core/util/ReenableStupidWarnings.h

src/Eigen/src/Core/util/ReshapedHelper.h

src/Eigen/src/Core/util/XprHelper.h

src/Eigen/src/Core/functors/NullaryFunctors.h

src/Eigen/src/Core/functors/StlFunctors.h

src/Eigen/src/Core/functors/BinaryFunctors.h

src/Eigen/src/Core/functors/TernaryFunctors.h

src/Eigen/src/Core/functors/UnaryFunctors.h

src/Eigen/src/Core/functors/AssignmentFunctors.h

src/Eigen/src/Core/arch/MSA/Complex.h

src/Eigen/src/Core/arch/MSA/MathFunctions.h

src/Eigen/src/Core/arch/MSA/PacketMath.h

src/Eigen/src/Core/arch/SVE/MathFunctions.h

src/Eigen/src/Core/arch/SVE/PacketMath.h

src/Eigen/src/Core/arch/SVE/TypeCasting.h

src/Eigen/src/Core/arch/ZVector/Complex.h

src/Eigen/src/Core/arch/ZVector/MathFunctions.h

src/Eigen/src/Core/arch/ZVector/PacketMath.h

src/Eigen/src/Core/arch/AVX/Complex.h

src/Eigen/src/Core/arch/AVX/MathFunctions.h

src/Eigen/src/Core/arch/AVX/PacketMath.h

src/Eigen/src/Core/arch/AVX/TypeCasting.h

src/Eigen/src/Core/arch/AltiVec/Complex.h

src/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h

src/Eigen/src/Core/arch/AltiVec/MathFunctions.h

src/Eigen/src/Core/arch/AltiVec/PacketMath.h

src/Eigen/src/Core/arch/AltiVec/MatrixProduct.h

src/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h

src/Eigen/src/Core/arch/GPU/MathFunctions.h

src/Eigen/src/Core/arch/GPU/PacketMath.h

src/Eigen/src/Core/arch/GPU/TypeCasting.h

src/Eigen/src/Core/arch/HIP/hcc/math_constants.h

src/Eigen/src/Core/arch/AVX512/Complex.h

src/Eigen/src/Core/arch/AVX512/MathFunctions.h

src/Eigen/src/Core/arch/AVX512/PacketMath.h

src/Eigen/src/Core/arch/AVX512/TypeCasting.h

src/Eigen/src/Core/arch/SSE/Complex.h

src/Eigen/src/Core/arch/SSE/MathFunctions.h

src/Eigen/src/Core/arch/SSE/PacketMath.h

src/Eigen/src/Core/arch/SSE/TypeCasting.h

src/Eigen/src/Core/arch/CUDA/Complex.h

src/Eigen/src/Core/arch/SYCL/InteropHeaders.h

src/Eigen/src/Core/arch/SYCL/MathFunctions.h

src/Eigen/src/Core/arch/SYCL/PacketMath.h

src/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h

src/Eigen/src/Core/arch/SYCL/TypeCasting.h

src/Eigen/src/Core/arch/NEON/Complex.h

src/Eigen/src/Core/arch/NEON/MathFunctions.h

src/Eigen/src/Core/arch/NEON/PacketMath.h

src/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h

src/Eigen/src/Core/arch/NEON/TypeCasting.h

src/Eigen/src/Core/arch/Default/ConjHelper.h

src/Eigen/src/Core/arch/Default/Half.h

src/Eigen/src/Core/arch/Default/BFloat16.h

src/Eigen/src/Core/arch/Default/TypeCasting.h

src/Eigen/src/Core/arch/Default/Settings.h

src/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h

src/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h

src/Eigen/src/Core/products/TriangularMatrixMatrix.h

src/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h

src/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h

src/Eigen/src/Core/products/TriangularMatrixVector.h

src/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h

src/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h

src/Eigen/src/Core/products/TriangularSolverMatrix.h

src/Eigen/src/Core/products/GeneralBlockPanelKernel.h

src/Eigen/src/Core/products/Parallelizer.h

src/Eigen/src/Core/products/SelfadjointMatrixMatrix.h

src/Eigen/src/Core/products/GeneralMatrixVector.h

src/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h

src/Eigen/src/Core/products/SelfadjointRank2Update.h

src/Eigen/src/Core/products/SelfadjointProduct.h

src/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h

src/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h

src/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h

src/Eigen/src/Core/products/GeneralMatrixMatrix.h

src/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h

src/Eigen/src/Core/products/TriangularSolverVector.h

src/Eigen/src/Core/products/SelfadjointMatrixVector.h

src/Eigen/src/PaStiXSupport/PaStiXSupport.h

src/Eigen/src/Householder/BlockHouseholder.h

src/Eigen/src/Householder/HouseholderSequence.h

src/Eigen/src/Householder/Householder.h

src/Eigen/unsupported/Splines

src/Eigen/unsupported/AutoDiff

src/Eigen/unsupported/Polynomials

src/Eigen/unsupported/SparseExtra

src/Eigen/unsupported/KroneckerProduct

src/Eigen/unsupported/BVH

src/Eigen/unsupported/NumericalDiff

src/Eigen/unsupported/Skyline

src/Eigen/unsupported/FFT

src/Eigen/unsupported/MatrixFunctions

src/Eigen/unsupported/IterativeSolvers

src/Eigen/unsupported/NonLinearOptimization

src/Eigen/unsupported/OpenGLSupport

src/Eigen/unsupported/ArpackSupport

src/Eigen/unsupported/CMakeLists.txt

src/Eigen/unsupported/AlignedVector3

src/Eigen/unsupported/AdolcForward

src/Eigen/unsupported/MPRealSupport

src/Eigen/unsupported/EulerAngles

src/Eigen/unsupported/SpecialFunctions

src/Eigen/unsupported/MoreVectorization

src/Eigen/unsupported/LevenbergMarquardt

src/Eigen/unsupported/src/Splines/Spline.h

src/Eigen/unsupported/src/Splines/SplineFwd.h

src/Eigen/unsupported/src/Splines/SplineFitting.h

src/Eigen/unsupported/src/AutoDiff/AutoDiffScalar.h

src/Eigen/unsupported/src/AutoDiff/AutoDiffJacobian.h

src/Eigen/unsupported/src/AutoDiff/AutoDiffVector.h

src/Eigen/unsupported/src/Polynomials/PolynomialUtils.h

src/Eigen/unsupported/src/Polynomials/Companion.h

src/Eigen/unsupported/src/Polynomials/PolynomialSolver.h

src/Eigen/unsupported/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h

src/Eigen/unsupported/src/SparseExtra/RandomSetter.h

src/Eigen/unsupported/src/SparseExtra/BlockSparseMatrix.h

src/Eigen/unsupported/src/SparseExtra/DynamicSparseMatrix.h

src/Eigen/unsupported/src/SparseExtra/MarketIO.h

src/Eigen/unsupported/src/SparseExtra/BlockOfDynamicSparseMatrix.h

src/Eigen/unsupported/src/SparseExtra/MatrixMarketIterator.h

src/Eigen/unsupported/src/KroneckerProduct/KroneckerTensorProduct.h

src/Eigen/unsupported/src/BVH/KdBVH.h

src/Eigen/unsupported/src/BVH/BVAlgorithms.h

src/Eigen/unsupported/src/NumericalDiff/NumericalDiff.h

src/Eigen/unsupported/src/Skyline/SkylineStorage.h

src/Eigen/unsupported/src/Skyline/SkylineMatrixBase.h

src/Eigen/unsupported/src/Skyline/SkylineUtil.h

src/Eigen/unsupported/src/Skyline/SkylineInplaceLU.h

src/Eigen/unsupported/src/Skyline/SkylineMatrix.h

src/Eigen/unsupported/src/Skyline/SkylineProduct.h

src/Eigen/unsupported/src/FFT/ei_fftw_impl.h

src/Eigen/unsupported/src/FFT/ei_kissfft_impl.h

src/Eigen/unsupported/src/MatrixFunctions/MatrixFunction.h

src/Eigen/unsupported/src/MatrixFunctions/MatrixPower.h

src/Eigen/unsupported/src/MatrixFunctions/MatrixExponential.h

src/Eigen/unsupported/src/MatrixFunctions/MatrixLogarithm.h

src/Eigen/unsupported/src/MatrixFunctions/MatrixSquareRoot.h

src/Eigen/unsupported/src/MatrixFunctions/StemFunction.h

src/Eigen/unsupported/src/IterativeSolvers/IterationController.h

src/Eigen/unsupported/src/IterativeSolvers/MINRES.h

src/Eigen/unsupported/src/IterativeSolvers/IncompleteLU.h

src/Eigen/unsupported/src/IterativeSolvers/DGMRES.h

src/Eigen/unsupported/src/IterativeSolvers/IDRS.h

src/Eigen/unsupported/src/IterativeSolvers/ConstrainedConjGrad.h

src/Eigen/unsupported/src/IterativeSolvers/GMRES.h

src/Eigen/unsupported/src/IterativeSolvers/Scaling.h

src/Eigen/unsupported/src/NonLinearOptimization/qrsolv.h

src/Eigen/unsupported/src/NonLinearOptimization/fdjac1.h

src/Eigen/unsupported/src/NonLinearOptimization/lmpar.h

src/Eigen/unsupported/src/NonLinearOptimization/rwupdt.h

src/Eigen/unsupported/src/NonLinearOptimization/r1updt.h

src/Eigen/unsupported/src/NonLinearOptimization/covar.h

src/Eigen/unsupported/src/NonLinearOptimization/dogleg.h

src/Eigen/unsupported/src/NonLinearOptimization/HybridNonLinearSolver.h

src/Eigen/unsupported/src/NonLinearOptimization/r1mpyq.h

src/Eigen/unsupported/src/NonLinearOptimization/chkder.h

src/Eigen/unsupported/src/NonLinearOptimization/LevenbergMarquardt.h

src/Eigen/unsupported/src/EulerAngles/EulerAngles.h

src/Eigen/unsupported/src/EulerAngles/EulerSystem.h

src/Eigen/unsupported/src/EulerAngles/CMakeLists.txt

src/Eigen/unsupported/src/SpecialFunctions/SpecialFunctionsImpl.h

src/Eigen/unsupported/src/SpecialFunctions/SpecialFunctionsFunctors.h

src/Eigen/unsupported/src/SpecialFunctions/BesselFunctionsBFloat16.h

src/Eigen/unsupported/src/SpecialFunctions/BesselFunctionsImpl.h

src/Eigen/unsupported/src/SpecialFunctions/SpecialFunctionsBFloat16.h

src/Eigen/unsupported/src/SpecialFunctions/SpecialFunctionsPacketMath.h

src/Eigen/unsupported/src/SpecialFunctions/BesselFunctionsArrayAPI.h

src/Eigen/unsupported/src/SpecialFunctions/HipVectorCompatibility.h

src/Eigen/unsupported/src/SpecialFunctions/BesselFunctionsFunctors.h

src/Eigen/unsupported/src/SpecialFunctions/BesselFunctionsHalf.h

src/Eigen/unsupported/src/SpecialFunctions/SpecialFunctionsArrayAPI.h

src/Eigen/unsupported/src/SpecialFunctions/BesselFunctionsPacketMath.h

src/Eigen/unsupported/src/SpecialFunctions/SpecialFunctionsHalf.h

src/Eigen/unsupported/src/SpecialFunctions/arch/AVX/BesselFunctions.h

src/Eigen/unsupported/src/SpecialFunctions/arch/AVX/SpecialFunctions.h

src/Eigen/unsupported/src/SpecialFunctions/arch/GPU/SpecialFunctions.h

src/Eigen/unsupported/src/SpecialFunctions/arch/AVX512/BesselFunctions.h

src/Eigen/unsupported/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h

src/Eigen/unsupported/src/SpecialFunctions/arch/NEON/BesselFunctions.h

src/Eigen/unsupported/src/SpecialFunctions/arch/NEON/SpecialFunctions.h

src/Eigen/unsupported/src/MoreVectorization/MathFunctions.h

src/Eigen/unsupported/src/LevenbergMarquardt/LMonestep.h

src/Eigen/unsupported/src/LevenbergMarquardt/CopyrightMINPACK.txt

src/Eigen/unsupported/src/LevenbergMarquardt/LMcovar.h

src/Eigen/unsupported/src/LevenbergMarquardt/LMqrsolv.h

src/Eigen/unsupported/src/LevenbergMarquardt/LMpar.h

src/Eigen/unsupported/src/LevenbergMarquardt/LevenbergMarquardt.h

src/Eigen/unsupported/CXX11/CMakeLists.txt

src/Eigen/unsupported/CXX11/TensorSymmetry

src/Eigen/unsupported/CXX11/ThreadPool

src/Eigen/unsupported/CXX11/Tensor

src/Eigen/unsupported/CXX11/src/util/EmulateArray.h

src/Eigen/unsupported/CXX11/src/util/CXX11Workarounds.h

src/Eigen/unsupported/CXX11/src/util/MaxSizeVector.h

src/Eigen/unsupported/CXX11/src/util/CXX11Meta.h

src/Eigen/unsupported/CXX11/src/TensorSymmetry/DynamicSymmetry.h

src/Eigen/unsupported/CXX11/src/TensorSymmetry/StaticSymmetry.h

src/Eigen/unsupported/CXX11/src/TensorSymmetry/Symmetry.h

src/Eigen/unsupported/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h

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src/Eigen/unsupported/CXX11/src/Tensor/TensorIntDiv.h

src/Eigen/unsupported/CXX11/src/Tensor/TensorReverse.h

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src/Eigen/unsupported/CXX11/src/Tensor/TensorDeviceCuda.h

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src/Eigen/unsupported/CXX11/src/Tensor/TensorExecutor.h

src/Eigen/unsupported/CXX11/src/Tensor/TensorConvolution.h

inst/doc/localScorePackageDocumentation.R inst/doc/localScorePackageDocumentation.Rmd

inst/doc/localScorePackageDocumentation.html

build/vignette.rds

tests/testthat.R tests/testthat/test-mcc.R tests/testthat/test-karlin.R tests/testthat/test-daudin.R tests/testthat/test-exact_mc.R tests/testthat/test-markov_generic.R tests/testthat/test-localScoreC.R vignettes/localScorePackageDocumentation.Rmd

data/HydroScore.rda

data/Seq219.rda

data/aeso.data.rda

data/SeqListSCOPe.rda

data/Seq1093.rda

data/ShortSeq.rda

data/SJSyndrome.data.rda

data/Seq31.rda

data/MySeqList.rda

data/MidSeq.rda

data/dico.rda

data/Aeso.rda

data/LongSeq.rda

man/aeso.data.Rd man/loadMatrixFromFile.Rd man/dico.Rd man/CharSequence2ScoreSequence.Rd man/karlinMonteCarlo.Rd man/localScoreC.Rd man/automatic_analysis.Rd man/scoreDictionnary2probabilityVector.Rd man/LongSeq.Rd man/transmatrix2sequence.Rd man/Aeso.Rd man/Seq219.Rd man/localScoreC_double.Rd man/sequences2transmatrix.Rd man/MySeqList.Rd man/karlin.Rd man/stationary_distribution.Rd man/RealScores2IntegerScores.Rd man/loadScoreFromFile.Rd man/karlinMonteCarlo_double.Rd man/MidSeq.Rd man/scoreSequences2probabilityVector.Rd man/CharSequences2ScoreSequences.Rd man/ShortSeq.Rd man/HydroScore.Rd man/mcc.Rd man/SJSyndrome.data.Rd man/Seq31.Rd man/monteCarlo_double.Rd man/localScore-package.Rd man/exact_mc.Rd man/SeqListSCOPe.Rd man/monteCarlo.Rd man/maxPartialSumd.Rd man/daudin.Rd man/Seq1093.Rd man/lindley.Rd

localScore documentation built on Nov. 3, 2023, 1:08 a.m.