Seq219: Protein sequence

In localScore: Package for Sequence Analysis by Local Score

Protein sequence

Description

A protein sequence.

Usage

data(Seq219)

Format

A character string with 219 characters corresponding to P49755.fasta query in UniProt Data base.

Source

https://www.uniprot.org/

Examples

data(Seq219)
Seq219
nchar(Seq219)
data(HydroScore)
seqScore=CharSequence2ScoreSequence(Seq219,HydroScore)
seqScore[1:30]
localScoreC(seqScore)$localScore
prob1 <- scoreSequences2probabilityVector(list(seqScore))
daudin(local_score = 52, sequence_length = nchar(Seq219),
               score_probabilities = prob1,
               sequence_min = min(seqScore),
               sequence_max = max(seqScore))
score <- -5:5
prob2 <- c(0.15,0.15,0.1,0.1,0.0,0.05,0.15,0.05,0.2,0.0,0.05)
daudin(local_score = 52, sequence_length = nchar(Seq219),
       score_probabilities = prob2,
       sequence_min = min(seqScore),
       sequence_max = max(seqScore))

localScore documentation built on April 3, 2025, 5:26 p.m.