CharSequences2ScoreSequences: Convert several character sequences into score sequences

In localScore: Package for Sequence Analysis by Local Score

Convert several character sequences into score sequences

Description

Convert several character sequence into score sequences. For only one sequence see CharSequence2ScoreSequence() function.

Usage

CharSequences2ScoreSequences(sequences, dictionary)

Arguments

sequences	a list of character sequences given as string
dictionary	a data.frame with rownames containing letters, first column containing associated scores, optional second column containing associated probabilities

Value

a list of score sequences

See Also

CharSequence2ScoreSequence

Examples

data(Seq31)
Seq31
data(Seq219)
Seq219
data(HydroScore)
MySequences=list("A1"=Seq31,"A2"=Seq219)
CharSequences2ScoreSequences(MySequences,HydroScore)

localScore documentation built on April 3, 2025, 5:26 p.m.