Seq1093: Long protein sequence

In localScore: Package for Sequence Analysis by Local Score

Long protein sequence

Description

A long protein sequence.

Usage

Seq1093

Format

A character string with 1093 characters corresponding to Q60519.fasta in UniProt Data base.

Source

https://www.uniprot.org/

Examples

data(Seq1093)
Seq1093
nchar(Seq1093)
data(HydroScore)
seqScore=CharSequence2ScoreSequence(Seq1093,HydroScore)
seqScore[1:50]
localScoreC(seqScore)$localScore
LS=localScoreC(seqScore)$localScore[1]
prob1 = scoreSequences2probabilityVector(list(seqScore))
daudin(localScore = LS, sequence_length = nchar(Seq1093),
               score_probabilities = prob1,
               sequence_min = min(seqScore),
               sequence_max = max(seqScore))
karlin(localScore = LS, sequence_length = nchar(Seq1093),
score_probabilities = prob1,
sequence_min = min(seqScore),
sequence_max = max(seqScore))

localScore documentation built on Nov. 3, 2023, 1:08 a.m.