API for localScore
Package for Sequence Analysis by Local Score

Global functions
Aeso Man page
CharSequence2ScoreSequence Man page Source code
CharSequences2ScoreSequences Man page Source code
File2CharSequences Source code
HydroScore Man page
LongSeq Man page
MarkovParameters Man page
MidSeq Man page
MySeqList Man page
RealScores2IntegerScores Man page Source code
SJSyndrome Man page
SJSyndrome.data Man page
Seq1093 Man page
Seq219 Man page
Seq31 Man page
SeqListSCOPe Man page
ShortSeq Man page
aeso.data Man page
automatic_analysis Man page Source code
cell_value Source code
create_matrix_P Source code
daudin Man page Source code
dico Man page
exact_mc Man page Source code
generalize_to_all_min Source code
generate_markov_hist_score Source code
generation_empirical_processes Source code
karlin Man page Source code
karlinMonteCarlo Man page Source code
karlinMonteCarlo_double Man page Source code
karlin_parameters Man page Source code
lindley Man page Source code
loadCharSequencesFromFile Source code
loadMatrixFromFile Man page Source code
loadScoreFromFile Man page Source code
localScore Man page
localScore-package Man page
localScoreC Man page Source code
localScoreC_double Man page Source code
localScoreC_int Man page Source code
matrix_M Source code
maxPartialSumd Man page Source code
mcc Man page Source code
monteCarlo Man page Source code
monteCarlo_double Man page Source code
old2newDico Source code
part Source code
proba_empirical_first_excursion_markov Source code
proba_empirical_ith_excursion_markov Source code
proba_excursion_markov_calcul_z Source code
proba_theoretical_first_excursion_iid Man page Source code
proba_theoretical_first_excursion_markov Source code
proba_theoretical_first_excursion_markov_alpha Source code
proba_theoretical_ith_excursion_iid Man page Source code
proba_theoretical_ith_excursion_markov Man page Source code
recordTimes Man page Source code
scoreDictionnary2probabilityVector Source code
scoreSequences2probabilityVector Man page Source code
sequences2transmatrix Man page Source code
sim_local_scores Source code
stationary_distribution Man page Source code
str_to_alphabeta Source code
traj Source code
transmatrix2sequence Man page Source code
localScore documentation built on April 3, 2025, 5:26 p.m.