API for localScore
Package for Sequence Analysis by Local Score
| Global functions | |
|---|---|
| Aeso | Man page |
| CharSequence2ScoreSequence | Man page Source code |
| CharSequences2ScoreSequences | Man page Source code |
| File2CharSequences | Source code |
| HydroScore | Man page |
| LongSeq | Man page |
| MarkovParameters | Man page |
| MidSeq | Man page |
| MySeqList | Man page |
| RealScores2IntegerScores | Man page Source code |
| SJSyndrome | Man page |
| SJSyndrome.data | Man page |
| Seq1093 | Man page |
| Seq219 | Man page |
| Seq31 | Man page |
| SeqListSCOPe | Man page |
| ShortSeq | Man page |
| aeso.data | Man page |
| automatic_analysis | Man page Source code |
| cell_value | Source code |
| create_matrix_P | Source code |
| daudin | Man page Source code |
| dico | Man page |
| exact_mc | Man page Source code |
| generalize_to_all_min | Source code |
| generate_markov_hist_score | Source code |
| generation_empirical_processes | Source code |
| karlin | Man page Source code |
| karlinMonteCarlo | Man page Source code |
| karlinMonteCarlo_double | Man page Source code |
| karlin_parameters | Man page Source code |
| lindley | Man page Source code |
| loadCharSequencesFromFile | Source code |
| loadMatrixFromFile | Man page Source code |
| loadScoreFromFile | Man page Source code |
| localScore | Man page |
| localScore-package | Man page |
| localScoreC | Man page Source code |
| localScoreC_double | Man page Source code |
| localScoreC_int | Man page Source code |
| matrix_M | Source code |
| maxPartialSumd | Man page Source code |
| mcc | Man page Source code |
| monteCarlo | Man page Source code |
| monteCarlo_double | Man page Source code |
| old2newDico | Source code |
| part | Source code |
| proba_empirical_first_excursion_markov | Source code |
| proba_empirical_ith_excursion_markov | Source code |
| proba_excursion_markov_calcul_z | Source code |
| proba_theoretical_first_excursion_iid | Man page Source code |
| proba_theoretical_first_excursion_markov | Source code |
| proba_theoretical_first_excursion_markov_alpha | Source code |
| proba_theoretical_ith_excursion_iid | Man page Source code |
| proba_theoretical_ith_excursion_markov | Man page Source code |
| recordTimes | Man page Source code |
| scoreDictionnary2probabilityVector | Source code |
| scoreSequences2probabilityVector | Man page Source code |
| sequences2transmatrix | Man page Source code |
| sim_local_scores | Source code |
| stationary_distribution | Man page Source code |
| str_to_alphabeta | Source code |
| traj | Source code |
| transmatrix2sequence | Man page Source code |
