Man pages for localScore
Package for Sequence Analysis by Local Score
| Aeso | Congenital oesophageal atresia data |
| aeso.data | Deprecated |
| automatic_analysis | Automatic analysis |
| CharSequence2ScoreSequence | Convert a character sequence into a score sequence |
| CharSequences2ScoreSequences | Convert several character sequences into score sequences |
| daudin | Daudin [p-value] [iid] |
| exact_mc | Exact method for p-value [Markov chains] |
| HydroScore | Dictionary |
| karlin | Karlin [p-value] [iid] |
| karlinMonteCarlo | Monte Carlo - Karlin [p-value] |
| lindley | Lindley process |
| loadMatrixFromFile | Loads matrix from csv-File |
| loadScoreFromFile | Load score from file |
| localScoreC | Local score |
| localScore-package | localScore: Package for Sequence Analysis by Local Score |
| MarkovParameters | Functions parameters global description |
| maxPartialSumd | Maximum of the partial sum [probability] [iid] |
| mcc | MCC [p-value] [iid] |
| monteCarlo | Monte Carlo method [p-value] |
| proba_theoretical_first_excursion_iid | Probability P(Q(1)>=q a) that the height of the first... |
| proba_theoretical_ith_excursion_iid | Probability P(Q(i)>=q a) that the height of the ith excursion... |
| proba_theoretical_ith_excursion_markov | theoretical probability of reaching the threshold score a on... |
| RealScores2IntegerScores | Convert a real scores vector into an integer scores vector |
| recordTimes | Calculate the record times of a sequence |
| scoreSequences2probabilityVector | Empirical distribution from sequences |
| Seq1093 | Long protein sequence |
| Seq219 | Protein sequence |
| Seq31 | Short protein sequence |
| SeqListSCOPe | Several sequences |
| sequences2transmatrix | Transition matrix from sequence(s) |
| SJSyndrome | Stevens-Johnson syndrome data |
| stationary_distribution | Stationary distribution [Markov chains] |
| transmatrix2sequence | Sampling function for Markov chains |
