mappoly: Genetic Linkage Maps in Autopolyploids

Construction of genetic maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologues. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). For more detail, please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Package details

AuthorMarcelo Mollinari [aut, cre] (<https://orcid.org/0000-0002-7001-8498>), Gabriel Gesteira [aut] (<https://orcid.org/0000-0002-4106-7346>), Guilhereme Pereira [ctb] (<https://orcid.org/0000-0002-7106-8630>), Augusto Garcia [ctb] (<https://orcid.org/0000-0003-0634-3277>), Zhao-Bang Zeng [ctb] (<https://orcid.org/0000-0002-3115-1149>), Katharine Preedy [ctb, cph] (MDS ordering algorithm), Robert Gentleman [cph] (C code for MLE optimization in src/pairwise_estimation.cpp), Ross Ihaka [cph] (C code for MLE optimization in src/pairwise_estimation.cpp), R Foundation [cph] (C code for MLE optimization in src/pairwise_estimation.cpp), R-core [cph] (C code for MLE optimization in src/pairwise_estimation.cpp)
MaintainerMarcelo Mollinari <mmollin@ncsu.edu>
LicenseGPL-3
Version0.3.1
URL https://github.com/mmollina/MAPpoly
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("mappoly")

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mappoly documentation built on July 6, 2022, 5:08 p.m.