calc_prefpair_profiles: Preferential pairing profiles

In mappoly: Genetic Linkage Maps in Autopolyploids

Preferential pairing profiles

Description

Given the genotype conditional probabilities for a map, this function computes the probability profiles for all possible homolog pairing configurations in both parents.

Usage

calc_prefpair_profiles(input.genoprobs, verbose = TRUE)

Arguments

input.genoprobs	an object of class mappoly.genoprob
verbose	if TRUE (default), the current progress is shown; if FALSE, no output is produced

Author(s)

Marcelo Mollinari, [e-mail] and Guilherme Pereira, [e-mail]

References

Mollinari M., Olukolu B. A., Pereira G. da S., Khan A., Gemenet D., Yencho G. C., Zeng Z-B. (2020), Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping, _G3: Genes, Genomes, Genetics_. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1534/g3.119.400620")}

Examples

  ## tetraploid example
  w1 <- lapply(solcap.dose.map[1:12], calc_genoprob)
  x1 <- calc_prefpair_profiles(w1)
  print(x1)
  plot(x1)

mappoly documentation built on May 29, 2024, 6:05 a.m.