dist_prob_to_class: Returns the class with the highest probability in a genotype...
In mappoly: Genetic Linkage Maps in Autopolyploids
dist_prob_to_class R Documentation
Returns the class with the highest probability in
a genotype probability distribution
Description
Returns the class with the highest probability in
a genotype probability distribution
Usage
dist_prob_to_class(geno, prob.thres = 0.9)
Arguments
geno
the probabilistic genotypes contained in the object
'mappoly.data'
prob.thres
probability threshold to select the genotype.
Values below this genotype are assumed as missing data
Value
a matrix containing the doses of each genotype and
marker. Markers are disposed in rows and individuals are
disposed in columns. Missing data are represented by NAs
Examples
geno.dose <- dist_prob_to_class(hexafake.geno.dist$geno)
geno.dose$geno.dose[1:10,1:10]
mappoly documentation built on May 29, 2024, 6:05 a.m.
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| dist_prob_to_class | R Documentation |
Returns the class with the highest probability in a genotype probability distribution
Description
Returns the class with the highest probability in a genotype probability distribution
Usage
dist_prob_to_class(geno, prob.thres = 0.9)
Arguments
geno |
the probabilistic genotypes contained in the object
|
prob.thres |
probability threshold to select the genotype. Values below this genotype are assumed as missing data |
Value
a matrix containing the doses of each genotype and marker. Markers are disposed in rows and individuals are disposed in columns. Missing data are represented by NAs
Examples
geno.dose <- dist_prob_to_class(hexafake.geno.dist$geno)
geno.dose$geno.dose[1:10,1:10]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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