View source: R/homolog_probs.R
calc_homologprob | R Documentation |
Compute homolog probabilities for all individuals in the full-sib population given a map and conditional genotype probabilities.
calc_homologprob(input.genoprobs, verbose = TRUE)
input.genoprobs |
an object of class |
verbose |
if |
Marcelo Mollinari, mmollin@ncsu.edu
Mollinari M., Olukolu B. A., Pereira G. da S., Khan A., Gemenet D., Yencho G. C., Zeng Z-B. (2020), Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400620
## tetraploid example w1 <- calc_genoprob(solcap.dose.map[[1]]) h.prob <- calc_homologprob(w1) print(h.prob) plot(h.prob, ind = 5, use.plotly = FALSE) ## using error modeling (removing noise) w2 <- calc_genoprob_error(solcap.err.map[[1]]) h.prob2 <- calc_homologprob(w2) print(h.prob2) plot(h.prob2, ind = 5, use.plotly = FALSE)
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