denoverplot1: Plot Overlaying Densities

In mcmcplots: Create Plots from MCMC Output

Description

Creates a plot containing overlaying kernel density estimates from different MCMC simulations. This function is used in the denoverplot function to produce plots of overlaying densities for parameters in common from two different MCMC simulations.

Usage

denoverplot1(..., ci = NULL, col = NULL, lty = 1, xlim = NULL,
ylim = NULL, xlab = "", ylab = "Density", main = NULL, style = c("gray",
"plain"), gpar = NULL)

Arguments

...	one or more vectors or a list containing one or more vectors to be plotted.
ci	if non NULL, plots (100*ci)% credible interval limits on the density plots. The default (NULL) is not to plot the intervals.
col	one or more colors for the densities. Default is mcmcplotsPalette(n), where n is the number of elements in the ... argument.
lty	types of lines to plot.
xlim	limits for the x axis.
ylim	limits for the y axis.
xlab	label for the x axis.
ylab	label for the y axis.
main	main title for plot.
style	if "gray", then the plotting region is printed with a gray background, otherwise the default plotting region is used.
gpar	a list of additional graphical parameters to be passed to the plotting function. See help for par.

Value

Creates a plot.

Author(s)

S. McKay Curtis with contributions from Ilya Goldin

See Also

denoverplot, denplot, traplot1

Examples

denoverplot1(rnorm(1000), rnorm(1000))
denoverplot1(rnorm(1000, 0.0, 1.0), rnorm(1000, 0.1, 1.0),
             style="plain", col=mcmcplotsPalette(2, type="grayscale"),
             ci=0.95)
denoverplot1(list(rgamma(1000, 1, 1), rgamma(1000, 1, 1)))

Example output

Loading required package: coda

mcmcplots documentation built on May 2, 2019, 1:29 p.m.