Files in mdatools

Multivariate Data Analysis for Chemometrics

NEWS.md README.md R/plsres.R R/simcares.R R/classmodel.R R/regcoeffs.R R/constraints.R R/pcares.R R/mcr.R R/ldecomp.R R/mdaplot.R R/mcrpure.R R/ipls.R R/simcamres.R R/defaults.R R/plsda.R R/classres.R R/misc.R R/simca.R R/mdaplotg.R R/regmodel.R R/regres.R R/crossval.R R/plsdares.R R/randtest.R R/mcrals.R R/simcam.R R/pls.R R/plotseries.R R/pca.R R/prep.R man/pls.getxdecomp.Rd man/plotXResiduals.Rd man/mda.im2data.Rd man/plotCooman.Rd man/summary.simcamres.Rd man/as.matrix.regres.Rd man/plotSpectra.Rd man/getVariance.mcr.Rd man/plotVariance.plsres.Rd man/plotBars.Rd man/plotSpecificity.Rd man/getVIPScores.pls.Rd man/constraintAngle.Rd man/simcam.Rd man/prep.msc.Rd man/plotYCumVariance.plsres.Rd man/plotModelDistance.Rd man/plot.pcares.Rd man/prep.list.Rd man/mdatools.Rd man/ipls.forward.Rd man/mda.subset.Rd man/plotXResiduals.pls.Rd man/mcrals.Rd man/summary.randtest.Rd man/getVIPScores.Rd man/plot.regres.Rd man/mcrals.ols.Rd man/mdaplotg.getLegend.Rd man/plot.classres.Rd man/as.matrix.simcamres.Rd man/pls.getxscores.Rd man/plotLoadings.Rd man/plotCooman.simcamres.Rd man/plotVIPScores.pls.Rd man/plotBiplot.Rd man/plotResiduals.pca.Rd man/plotVariance.mcr.Rd man/mdaplot.getColors.Rd man/getDataLabels.Rd man/showPredictions.Rd man/mda.purgeCols.Rd man/setDistanceLimits.Rd man/plot.ipls.Rd man/getConfidenceEllipse.Rd man/getLabelsAsValues.Rd man/summary.mcrals.Rd man/crossval.regmodel.Rd man/predict.pca.Rd man/ddrobust.param.Rd man/plotRMSE.ipls.Rd man/prep.savgol.Rd man/classres.Rd man/constraints.list.Rd man/pellets.Rd man/regres.bias.Rd man/summary.regres.Rd man/plotSensitivity.Rd man/getRegcoeffs.regmodel.Rd man/constraintNonNegativity.Rd man/employ.prep.Rd man/selratio.Rd man/plotPredictions.regres.Rd man/summary.pca.Rd man/plotBiplot.pca.Rd man/mdaplotg.processParam.Rd man/mdaplotg.showLegend.Rd man/print.regres.Rd man/plotMisclassified.classres.Rd man/plotYResiduals.plsres.Rd man/predict.pls.Rd man/prep.varsel.Rd man/plsda.Rd man/plotHist.randtest.Rd man/prepCalData.Rd man/summary.pcares.Rd man/hotelling.crit.Rd man/ldecomp.getVariances.Rd man/plotXYResiduals.Rd man/pls.getydecomp.Rd man/simdata.Rd man/plotPerformance.Rd man/plotXYScores.Rd man/plotLines.Rd man/ldecomp.getLimitsCoordinates.Rd man/categorize.pca.Rd man/pca.Rd man/plotCumVariance.mcr.Rd man/summary.plsres.Rd man/plotXCumVariance.plsres.Rd man/pls.cal.Rd man/categorize.Rd man/plotPredictions.classres.Rd man/prep.generic.Rd man/plot.randtest.Rd man/ddmoments.param.Rd man/showLabels.Rd man/mda.setattr.Rd man/jm.prob.Rd man/plsdares.Rd man/plotScores.Rd man/summary.regmodel.Rd man/mda.cbind.Rd man/plotYResiduals.Rd man/mda.exclcols.Rd man/plotDistDoF.Rd man/summary.simca.Rd man/getSelectivityRatio.pls.Rd man/plotXLoadings.pls.Rd man/plot.simcam.Rd man/plotQDoF.Rd man/plotConvexHull.Rd man/getMainTitle.Rd man/randtest.Rd man/plotRMSE.regmodel.Rd man/plotPredictions.simcam.Rd man/mda.inclcols.Rd man/plotPerformance.classmodel.Rd man/mdaplot.getXAxisLim.Rd man/plotXYLoadings.Rd man/mda.setimbg.Rd man/plotHotellingEllipse.Rd man/mdaplot.Rd man/plotWeights.Rd man/mdaplot.prepareColors.Rd man/print.ldecomp.Rd man/mdaplot.areColors.Rd man/plotCorr.Rd man/repmat.Rd man/mdaplot.showColorbar.Rd man/mda.data2im.Rd man/ipls.backward.Rd man/pca.getB.Rd man/plotSelection.Rd man/plotXScores.plsres.Rd man/plotPurity.Rd man/splitExcludedData.Rd man/plotLoadings.pca.Rd man/print.simca.Rd man/plotMisclassified.classmodel.Rd man/classmodel.processRefValues.Rd man/mdaplot.getYAxisLim.Rd man/prep.autoscale.Rd man/plotXVariance.plsres.Rd man/pca.nipals.Rd man/plotXCumVariance.Rd man/mdaplotg.Rd man/chisq.prob.Rd man/plotVIPScores.Rd man/getPureVariables.Rd man/vipscores.Rd man/plotSelectivityRatio.Rd man/print.pca.Rd man/simcam.getPerformanceStats.Rd man/pls.Rd man/mcrals.fcnnls.Rd man/fprintf.Rd man/plotPredictions.Rd man/as.matrix.plsdares.Rd man/capitalize.Rd man/pls.run.Rd man/ldecomp.getDistances.Rd man/setDistanceLimits.pca.Rd man/classify.plsda.Rd man/ldecomp.plotResiduals.Rd man/getProbabilities.pca.Rd man/summary.ipls.Rd man/plotModelDistance.simcam.Rd man/getCalibrationData.simcam.Rd man/confint.regcoeffs.Rd man/crossval.getParams.Rd man/selectCompNum.Rd man/prep.ref2km.Rd man/plotRegcoeffs.Rd man/summary.classres.Rd man/mdaplotyy.Rd man/plotProbabilities.classres.Rd man/pca.svd.Rd man/regres.slope.Rd man/plot.simca.Rd man/crossval.str.Rd man/classres.getPerformance.Rd man/chisq.crit.Rd man/mda.purge.Rd man/mdaplot.showLines.Rd man/plot.mcr.Rd man/prep.snv.Rd man/plotSelectivityRatio.pls.Rd man/plotContributions.Rd man/plotErrorbars.Rd man/classify.simca.Rd man/plotRMSERatio.Rd man/plotWeights.pls.Rd man/plotXYLoadings.pls.Rd man/plotMisclassified.Rd man/crossval.simca.Rd man/mda.t.Rd man/pca.mvreplace.Rd man/print.regcoeffs.Rd man/mdaplot.getXTickLabels.Rd man/print.mcrpure.Rd man/as.matrix.simcares.Rd man/getConfusionMatrix.Rd man/summary.pls.Rd man/plotSelection.ipls.Rd man/plotXYResiduals.plsres.Rd man/print.plsdares.Rd man/plotXYScores.plsres.Rd man/plotVariance.ldecomp.Rd man/print.simcamres.Rd man/mcrals.nnls.Rd man/plotSpecificity.classres.Rd man/mda.exclrows.Rd man/showDistanceLimits.Rd man/plot.pls.Rd man/plotCumVariance.pca.Rd man/getProbabilities.simca.Rd man/mda.df2mat.Rd man/mda.getattr.Rd man/plotPredictions.simcamres.Rd man/pcares.Rd man/simcamres.Rd man/plotModellingPower.Rd man/mdaplotg.getYLim.Rd man/plotSpectra.mcr.Rd man/plotPerformance.classres.Rd man/plotPredictions.regmodel.Rd man/regress.addattrs.Rd man/plotVariance.pls.Rd man/constraint.Rd man/as.matrix.classres.Rd man/hotelling.prob.Rd man/predict.plsda.Rd man/plotXVariance.pls.Rd man/categorize.pls.Rd man/plotXResiduals.plsres.Rd man/getRegcoeffs.Rd man/mcr.Rd man/plotExtreme.pca.Rd man/summary.plsdares.Rd man/plotContributions.mcr.Rd man/people.Rd man/predict.mcrpure.Rd man/plotRegcoeffs.regmodel.Rd man/mdaplot.getYTickLabels.Rd man/pca.cal.Rd man/crossval.Rd man/print.pcares.Rd man/summary.plsda.Rd man/pls.getZLimits.Rd man/print.classres.Rd man/plotDiscriminationPower.Rd man/plotXVariance.Rd man/plotProbabilities.Rd man/plot.plsdares.Rd man/regres.rmse.Rd man/plotRMSE.regres.Rd man/plotYResiduals.regmodel.Rd man/prep.norm.Rd man/imshow.Rd man/regres.err.Rd man/plotXYScores.pls.Rd man/pls.simplsold.Rd man/plotseries.Rd man/getImplementedConstraints.Rd man/regres.r2.Rd man/plotSensitivity.classmodel.Rd man/mdaplot.formatValues.Rd man/print.regmodel.Rd man/mda.getexclind.Rd man/print.simcares.Rd man/predict.simcam.Rd man/summary.simcares.Rd man/plotYCumVariance.pls.Rd man/plotSensitivity.classres.Rd man/constraintUnimod.Rd man/pinv.Rd man/mdaplotg.getXLim.Rd man/mdaplot.plotAxes.Rd man/selectCompNum.pls.Rd man/dd.crit.Rd man/constraintClosure.Rd man/prep.Rd man/plot.plsres.Rd man/preparePlotData.Rd man/plotVariance.pca.Rd man/getSelectivityRatio.Rd man/mda.inclrows.Rd man/plotPointsShape.Rd man/plotConfidenceEllipse.Rd man/getConfusionMatrix.classres.Rd man/print.randtest.Rd man/setDistanceLimits.pls.Rd man/ldecomp.Rd man/mda.show.Rd man/getRes.Rd man/plotCumVariance.Rd man/getProbabilities.Rd man/getLabelsAsIndices.Rd man/getPlotColors.Rd man/ldecomp.getT2Limits.Rd man/pls.getLimitsCoordinates.Rd man/getCalibrationData.pca.Rd man/plotScatter.Rd man/ldecomp.getLimParams.Rd man/plotExtreme.Rd man/as.matrix.ldecomp.Rd man/plotRegressionLine.Rd man/plotRMSE.Rd man/pls.getpredictions.Rd man/mcrals.cal.Rd man/employ.constraint.Rd man/plotCumVariance.ldecomp.Rd man/mda.purgeRows.Rd man/print.plsda.Rd man/plotXScores.Rd man/plotResiduals.regres.Rd man/carbs.Rd man/unmix.mcrpure.Rd man/splitPlotData.Rd man/mcrpure.Rd man/constraintNorm.Rd man/selectCompNum.pca.Rd man/getSelectedComponents.Rd man/getConvexHull.Rd man/plotXCumVariance.pls.Rd man/pls.getyscores.Rd man/jm.crit.Rd man/plotDensity.Rd man/pca.run.Rd man/plotScores.ldecomp.Rd man/plotPurity.mcrpure.Rd man/print.simcam.Rd man/simca.Rd man/regres.Rd man/simcares.Rd man/plotPuritySpectra.mcrpure.Rd man/mdaplotg.prepareData.Rd man/summary.ldecomp.Rd man/plotDiscriminationPower.simcam.Rd man/predict.simca.Rd man/showPredictions.classres.Rd man/plotRMSERatio.regmodel.Rd man/plot.plsda.Rd man/plotPredictions.classmodel.Rd man/as.matrix.regcoeffs.Rd man/summary.mcrpure.Rd man/plsres.Rd man/plotHist.Rd man/ellipse.Rd man/regcoeffs.getStats.Rd man/plotCooman.simcam.Rd man/mdaplot.getXTicks.Rd man/getCalibrationData.Rd man/prep.transform.Rd man/plot.pca.Rd man/mda.rbind.Rd man/plotScores.pca.Rd man/predict.mcrals.Rd man/plotYVariance.plsres.Rd man/prep.alsbasecorr.Rd man/plotYCumVariance.Rd man/plotVariance.Rd man/plotResiduals.ldecomp.Rd man/ipls.Rd man/as.matrix.plsres.Rd man/plotXLoadings.Rd man/print.pls.Rd man/print.plsres.Rd man/plotXYResiduals.pls.Rd man/plotYVariance.pls.Rd man/plotPuritySpectra.Rd man/mdaplot.getYTicks.Rd man/plotYVariance.Rd man/pls.simpls.Rd man/summary.simcam.Rd man/plot.simcamres.Rd man/plotT2DoF.Rd man/print.ipls.Rd man/regcoeffs.Rd man/print.mcrals.Rd man/getImplementedPrepMethods.Rd man/plotResiduals.Rd man/summary.regcoeffs.Rd man/plot.regcoeffs.Rd man/plotXScores.pls.Rd man/plotSpecificity.classmodel.Rd man/plotCorr.randtest.Rd man/ldecomp.getQLimits.Rd