inst/publications.md
In meaRtools: Micro-Electro Array (MEA) Analysis

Publications

This code base was created in 2001 by Stephen Eglen at Washington University School of Medicine. Since then, parts of this code base have been used in the following papers:

Chabrol FP, Eglen SJ, Sernagor E (2012) GABAergic control of retinal ganglion cell dendritic development. Neuroscience 227:30–43 Available at: http://dx.doi.org/10.1016/j.neuroscience.2012.09.040.

Charlesworth P, Morton A, Eglen SJ, Komiyama NH, Grant SGN (2016) Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns. Neuropharmacology 100:47–55 Available at: http://dx.doi.org/10.1016/j.neuropharm.2015.07.027.

Cotterill E, Charlesworth P, Thomas CW, Paulsen O, Eglen SJ (2016) A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks. J Neurophysiol 116:306–321 Available at: http://dx.doi.org/10.1152/jn.00093.2016.

Cotterill E, Eglen SJ (2018) Burst detection methods. arXiv [q-bioNC] Available at: http://arxiv.org/abs/1802.01287.

Cotterill E, Hall D, Wallace K, Mundy WR, Eglen SJ, Shafer TJ (2016) Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates. J Biomol Screen 21:510–519 Available at: http://dx.doi.org/10.1177/1087057116640520.

Cutts CS, Eglen SJ (2014) Detecting Pairwise Correlations in Spike Trains: An Objective Comparison of Methods and Application to the Study of Retinal Waves. Journal of Neuroscience 34:14288–14303 Available at: http://www.jneurosci.org/cgi/doi/10.1523/JNEUROSCI.2767-14.2014.

Demas J, Eglen SJ, Wong ROL (2003) Developmental loss of synchronous spontaneous activity in the mouse retina is independent of visual experience. Journal of Neuroscience 23:2851–2860 Available at: https://www.ncbi.nlm.nih.gov/pubmed/12684472.

Eglen SJ, Weeks M, Jessop M, Simonotto J, Jackson T, Sernagor E (2014) A data repository and analysis framework for spontaneous neural activity recordings in developing retina. Gigascience 3:3 Available at: http://dx.doi.org/10.1186/2047-217X-3-3.

Maccione A, Hennig MH, Gandolfo M, Muthmann O, van Coppenhagen J, Eglen SJ, Berdondini L, Sernagor E (2014) Following the ontogeny of retinal waves: pan-retinal recordings of population dynamics in the neonatal mouse. J Physiol 592:1545–1563 Available at: http://dx.doi.org/10.1113/jphysiol.2013.262840.

MacLaren EJ, Charlesworth P, Coba MP, Grant SGN (2011) Knockdown of mental disorder susceptibility genes disrupts neuronal network physiology in vitro. Mol Cell Neurosci 47:93–99 Available at: http://dx.doi.org/10.1016/j.mcn.2010.12.014.

McSweeney KM, Gussow AB, Bradrick SS, Dugger SA, Gelfman S, Wang Q, Petrovski S, Frankel WN, Boland MJ, Goldstein DB (2016) Inhibition of microRNA-128 promotes excitability of cultured cortical neuronal networks. Genome Res Available at: http://dx.doi.org/10.1101/gr.199828.115.