Files in megaptera
MEGAPhylogeny Techniques in R
megaptera
megaptera/inst
megaptera/inst/doc
megaptera/inst/doc/Getting-started.rnw
megaptera/inst/doc/Getting-started.pdf
megaptera/NAMESPACE
megaptera/data
megaptera/data/input.rda
megaptera/data/NCBIeaa.rda
megaptera/data/cetacea.rda
megaptera/R
megaptera/R/sql.wrap.R
megaptera/R/dbWriteDNA.R
megaptera/R/fleshoutGuidetree.R
megaptera/R/ncbiLineage.R
megaptera/R/revCompTest.R
megaptera/R/locus.R
megaptera/R/EFetchLocus.R
megaptera/R/filter.alignment.R
megaptera/R/stepC.R
megaptera/R/megapteraProj.R
megaptera/R/dbUpdateTaxonomy.R
megaptera/R/check.Species.R
megaptera/R/tax2tree.R
megaptera/R/check.TaxAgainstPhy.R
megaptera/R/sqlTaxonomyHeader.R
megaptera/R/strip.infraspec.R
megaptera/R/myDist.R
megaptera/R/dbReadDNA.R
megaptera/R/write.dna.spectable.R
megaptera/R/splitGiTaxon.R
megaptera/R/supermatrix.R
megaptera/R/speciesConsensus.R
megaptera/R/stepG.R
megaptera/R/markersGenbank.R
megaptera/R/strip.spec.R
megaptera/R/sql.conform.R
megaptera/R/prune.phylo.rank.R
megaptera/R/stepH.R
megaptera/R/slog.R
megaptera/R/addTip.R
megaptera/R/dbUpdateLocus.R
megaptera/R/stepA.R
megaptera/R/getLineage.R
megaptera/R/meanPairwiseIdentity.R
megaptera/R/check.NameChanges.R
megaptera/R/dbDeleteSpec.R
megaptera/R/calcDistToRef.R
megaptera/R/specCons.R
megaptera/R/term.R
megaptera/R/coverage.R
megaptera/R/MAD.R
megaptera/R/funX.R
megaptera/R/extractLocus.R
megaptera/R/megaptera_heatmap.R
megaptera/R/check.Markers.R
megaptera/R/sortRanks.R
megaptera/R/stepF.R
megaptera/R/stepE.R
megaptera/R/is.alignable.R
megaptera/R/dbWriteString.r
megaptera/R/alignGenus.R
megaptera/R/mafft.merge.R
megaptera/R/whereToInsert.R
megaptera/R/downloadSequences.R
megaptera/R/dbAutofillTaxonomy.R
megaptera/R/check.Clades.R
megaptera/R/addNbAcc.R
megaptera/R/NCBI.wrap.R
megaptera/R/esearch.R
megaptera/R/dbReadTaxomony.R
megaptera/R/taxon.R
megaptera/R/check.Coverage.R
megaptera/R/nucleotideOverlap.R
megaptera/R/dbPars.R
megaptera/R/stepD.R
megaptera/R/dbReadReference.R
megaptera/R/maxDist.R
megaptera/R/fixTaxonomy.R
megaptera/R/megapteraPars.R
megaptera/R/ncbiTaxonomy.R
megaptera/R/stepB.R
megaptera/vignettes
megaptera/vignettes/Getting-started-concordance.tex
megaptera/vignettes/Getting-started.rnw
megaptera/vignettes/jbiogeo2.bst
megaptera/vignettes/biology.bib
megaptera/MD5
megaptera/build
megaptera/build/vignette.rds
megaptera/DESCRIPTION
megaptera/man
megaptera/man/megaptera-internal.Rd
megaptera/man/dbPars.Rd
megaptera/man/stepE.Rd
megaptera/man/addTip.Rd
megaptera/man/check.Function.Rd
megaptera/man/strip.infraspec.Rd
megaptera/man/prune.phylo.rank.Rd
megaptera/man/megapteraPars.Rd
megaptera/man/locus-class.Rd
megaptera/man/io.dna.db.Rd
megaptera/man/taxon-class.Rd
megaptera/man/megapteraPars-class.Rd
megaptera/man/stepA.Rd
megaptera/man/dbReadTaxonomy.Rd
megaptera/man/stepC.Rd
megaptera/man/megapteraProj.Rd
megaptera/man/stepG.Rd
megaptera/man/stepB.Rd
megaptera/man/megaptera-package.Rd
megaptera/man/dbPars-class.Rd
megaptera/man/ncbiTaxonomy.Rd
megaptera/man/fleshoutGuidetree.Rd
megaptera/man/taxon.Rd
megaptera/man/stepF.Rd
megaptera/man/locus.Rd
megaptera/man/cetacea.Rd
megaptera/man/stepD.Rd
megaptera/man/NCBIeaa.Rd
megaptera/man/dbUpdateTaxonomy.Rd
megaptera/man/stepH.Rd
megaptera/man/megapteraProj-class.Rd
megaptera/man/setLocus.Rd
