Description Usage Arguments Value Author(s) References
This set of functions helps to check progress and consistency of a megaptera project.
1 2 3 4 5 | check.NameChanges(conn, order.by = "spec")
check.Species(conn, spec, gene)
check.Markers(conn, subset, outgroup, colname = "blocks", plot = TRUE)
check.Coverage(conn, pool.markers = TRUE)
check.Clades(phy, tax)
|
conn |
a database connection object. |
spec |
character string giving the name of a species |
gene |
character string giving the name of a genetic marker |
subset |
character string giving the names of a subset of species |
outgroup |
character string giving the name(s) of outgroup species |
order.by |
a character string giving the column name that is used for ordering the output table |
colname |
character string: |
plot |
logical |
pool.markers |
logical |
phy |
an object of class |
tax |
a data frame containing a taxonomic classification |
a data frame
Christoph Heibl
http://www.ncbi.nlm.nih.gov/taxonomy
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