prune.phylo.rank: Prune Phylogenies
In megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Prune tips of a certain taxonomic rank from an object of class phylo and obtain a new phylo object whose tips are of a higher rank.
Usage
1
prune.phylo.rank(phy, tax, rank = "gen", add.nb = TRUE, quiet = FALSE)
Arguments
phy
an object of class phylo.
tax
a data frame containing taxonomic information
for the tip labels in phy.
rank
a character string giving the name of a
column (= taxonomic rank) in tax to which
phy will be pruned.
add.nb
logical
quiet
logical
Value
an object of class phylo.
Author(s)
Christoph Heibl
See Also
addTip to add terminal nodes to a phylogeny.
megaptera documentation built on Jan. 15, 2017, 11:19 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
Prune tips of a certain taxonomic rank from an object of class phylo and obtain a new phylo object whose tips are of a higher rank.
Usage
1 | prune.phylo.rank(phy, tax, rank = "gen", add.nb = TRUE, quiet = FALSE)
|
Arguments
phy |
an object of class |
tax |
a data frame containing taxonomic information
for the tip labels in |
rank |
a character string giving the name of a
column (= taxonomic rank) in |
add.nb |
logical |
quiet |
logical |
Value
an object of class phylo.
Author(s)
Christoph Heibl
See Also
addTip to add terminal nodes to a phylogeny.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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