stepH: Step H: Detect and Separate Unalignable Blocks
In megaptera: MEGAPhylogeny Techniques in R
Description
Usage
Arguments
Value
Note
Author(s)
See Also
Description
Dependent on the substitution rate of the genomic region and the taxonomic depth of the study group, not always all accession can be aligned into a single alignment. step H will detect and separate such unalignable alignment blocks.
Usage
1
Arguments
x
an object of class megapteraProj.
clean
logical: do cleaning/masking of alignment blocks?
Value
None. stepA is called for its side effects
Note
The function is under development and the results should always be checked.
Author(s)
Christoph Heibl
See Also
megapteraProj; stepF for the preceeding step and supermatrix for the concatenation of loci.
megaptera documentation built on Jan. 15, 2017, 11:19 p.m.
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Description Usage Arguments Value Note Author(s) See Also
Description
Dependent on the substitution rate of the genomic region and the taxonomic depth of the study group, not always all accession can be aligned into a single alignment. step H will detect and separate such unalignable alignment blocks.
Usage
1 |
Arguments
x |
an object of class |
clean |
logical: do cleaning/masking of alignment blocks? |
Value
None. stepA is called for its side effects
Note
The function is under development and the results should always be checked.
Author(s)
Christoph Heibl
See Also
megapteraProj; stepF for the preceeding step and supermatrix for the concatenation of loci.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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