megapteraProj: Bundle Input Data for the Pipeline
In megaptera: MEGAPhylogeny Techniques in R

Create an object of class megapteraProj to hold all the input data necessary for running of the pipeline.

megapteraProj(db, taxon, locus = locus(), 
   align.exe, mask.exe, 
   params = megapteraPars(), 
   update = FALSE, parallel = FALSE)

`db`	an object of class `dbPars`.
`taxon`	an object of class `taxon`.
`locus`	an object of class `locus`.
`align.exe`	a vector of mode `"character"`, giving name of the alignment program; currently only MAFFT is allowed
`mask.exe`	a vector of mode `"character"`, giving name of the alignment masking program; currently only Gblocks is allowed
`params`	an object of class `megapteraPars`.
`update`	logical: if `TRUE`, the pipeline's steps are executed as if called fro the first time, i.e., possibly overriding data and setting that have been previously achieved.
`parallel`	logical: if `TRUE`, several step in the pipeline will be run in parallel, otherwise all steps are serial.