API for metasnf
Meta Clustering with Similarity Network Fusion
| Global functions | |
|---|---|
| `[.clust_fns_list` | Source code |
| `[.data_list` | Source code |
| `[.dist_fns_list` | Source code |
| `[.ext_solutions_df` | Source code |
| `[.settings_df` | Source code |
| `[.sim_mats_list` | Source code |
| `[.snf_config` | Source code |
| `[.solutions_df` | Source code |
| `[.weights_matrix` | Source code |
| `[<-.ari_matrix` | Source code |
| `[<-.clust_fns_list` | Source code |
| `[<-.data_list` | Source code |
| `[<-.dist_fns_list` | Source code |
| `[<-.ext_solutions_df` | Source code |
| `[<-.settings_df` | Source code |
| `[<-.sim_mats_list` | Source code |
| `[<-.snf_config` | Source code |
| `[<-.solutions_df` | Source code |
| `[<-.t_ext_solutions_df` | Source code |
| `[<-.t_solutions_df` | Source code |
| `[<-.weights_matrix` | Source code |
| abcd_anxiety | Man page |
| abcd_colour | Man page |
| abcd_cort_sa | Man page |
| abcd_cort_t | Man page |
| abcd_depress | Man page |
| abcd_h_income | Man page |
| abcd_income | Man page |
| abcd_pubertal | Man page |
| abcd_subc_v | Man page |
| add_columns | Man page Source code |
| add_settings_df_rows | Man page Source code |
| adjusted_rand_index_heatmap | Man page Source code |
| age_df | Man page |
| alluvial_cluster_plot | Man page Source code |
| anxiety | Man page |
| arrange_dll | Man page Source code |
| as.data.frame.data_list | Man page Source code |
| as.data.frame.ext_solutions_df | Man page Source code |
| as.data.frame.settings_df | Man page Source code |
| as.data.frame.snf_config | Man page Source code |
| as.data.frame.solutions_df | Man page Source code |
| as.data.frame.t_ext_solutions_df | Man page Source code |
| as.data.frame.t_solutions_df | Man page Source code |
| as.data.frame.weights_matrix | Man page Source code |
| as.list.clust_fns_list | Man page Source code |
| as.list.data_list | Man page Source code |
| as.list.dist_fns_list | Man page Source code |
| as.list.sim_mats_list | Man page Source code |
| as.list.snf_config | Man page Source code |
| as.matrix.ari_matrix | Man page Source code |
| as.matrix.weights_matrix | Man page Source code |
| as_ari_matrix | Man page Source code |
| as_ari_matrix.matrix | Source code |
| as_data_list | Man page Source code |
| as_data_list.list | Source code |
| as_settings_df | Man page Source code |
| as_settings_df.data.frame | Source code |
| as_sim_mats_list | Man page Source code |
| as_sim_mats_list.list | Source code |
| as_snf_config | Man page Source code |
| as_snf_config.ext_solutions_df | Source code |
| as_snf_config.solutions_df | Source code |
| as_weights_matrix | Man page Source code |
| as_weights_matrix.matrix | Source code |
| assemble_data | Man page Source code |
| assoc_pval_heatmap | Man page Source code |
| auto_plot | Man page Source code |
| bar_plot | Man page Source code |
| batch_row_closure | Man page Source code |
| batch_snf | Man page Source code |
| batch_snf_subsamples | Man page Source code |
| c.ari_matrix | Source code |
| c.clust_fns_list | Source code |
| c.data_list | Source code |
| c.dist_fns_list | Source code |
| c.ext_solutions_df | Source code |
| c.settings_df | Source code |
| c.sim_mats_list | Source code |
| c.snf_config | Source code |
| c.solutions_df | Source code |
| c.t_ext_solutions_df | Source code |
| c.t_solutions_df | Source code |
| cache_a_complete_example_ext_sol_df | Man page |
| cache_a_complete_example_lp_ext_sol_df | Man page |
| cache_a_complete_example_sol_df | Man page |
| calc_aris | Man page Source code |
| calc_assoc_pval | Man page |
| calc_assoc_pval_matrix | Man page |
| calc_nmis | Man page Source code |
| calculate_coclustering | Man page Source code |
| calculate_db_indices | Man page Source code |
| calculate_dunn_indices | Man page Source code |
| calculate_silhouettes | Man page Source code |
| cancer_diagnosis_df | Man page |
| cat_colours | Man page Source code |
| cell_significance_fn | Man page Source code |
| char_to_fac | Man page Source code |
| check_cfll_fn_args | Man page Source code |
| check_cfll_fns | Man page Source code |
| check_cfll_named | Man page Source code |
| check_cfll_unique_names | Man page Source code |
| check_compatible_sdf_cfl | Man page Source code |
| check_compatible_sdf_dfl | Man page Source code |
| check_compatible_sdf_wm | Man page Source code |
| check_dataless_annotations | Man page Source code |
| check_dfll_fn_args | Man page Source code |
| check_dfll_fn_names | Man page Source code |
| check_dfll_item_names | Man page Source code |
| check_dfll_subitems_are_fns | Man page Source code |
| check_dfll_unique_names | Man page Source code |
| check_dll_duplicate_components | Man page Source code |
| check_dll_duplicate_features | Man page Source code |
| check_dll_empty_input | Man page Source code |
| check_dll_four_subitems | Man page Source code |
| check_dll_inherits_list | Man page Source code |
| check_dll_subitem_classes | Man page Source code |
| check_dll_subitem_names | Man page Source code |
| check_dll_types | Man page Source code |
| check_dll_uid | Man page Source code |
| check_hm_dependencies | Man page Source code |
| check_sdfl_colnames | Man page Source code |
| check_sdfl_is_df | Man page Source code |
| check_sdfl_numeric | Man page Source code |
| check_similarity_matrices | Man page Source code |
| check_valid_k | Man page Source code |
| check_valid_sc | Man page Source code |
| chi_squared_pval | Man page |
| clust_fns | Man page |
| clust_fns_list | Man page Source code |
| cocluster_density | Man page Source code |
| cocluster_heatmap | Man page Source code |
| coclustering_coverage_check | Man page Source code |
| collapse_dl | Man page Source code |
| colour_scale | Man page Source code |
| config_heatmap | Man page |
| convert_uids | Man page Source code |
| cort_sa | Man page |
| cort_t | Man page |
| data_list | Man page Source code |
| depress | Man page |
| diagnosis_df | Man page |
| discretisation | Man page Source code |
| discretisation_evec_data | Man page Source code |
| dist_fns | Man page |
| dist_fns_list | Man page Source code |
| dl_variable_summary | Man page Source code |
| dlapply | Man page Source code |
| dll_uid_first_col | Man page Source code |
| domain_merge | Man page Source code |
| domains | Man page Source code |
| dplyr_row_slice.ext_solutions_df | Man page Source code |
| dplyr_row_slice.solutions_df | Man page Source code |
| drop_cols | Man page Source code |
| drop_inputs | Man page Source code |
| ensure_dll_df | Man page Source code |
| esm_manhattan_plot | Man page |
| estimate_nclust_given_graph | Man page Source code |
| euclidean_distance | Man page Source code |
| expression_df | Man page |
| ext_solutions_df | Man page Source code |
| extend_solutions | Man page Source code |
| fav_colour | Man page |
| features | Man page Source code |
| features.data_list | Source code |
| features.ext_solutions_df | Source code |
| features.solutions_df | Source code |
| fisher_exact_pval | Man page |
| gender_df | Man page |
| generate_annotations_list | Man page Source code |
| generate_clust_algs_list | Man page Source code |
| generate_distance_metrics_list | Man page Source code |
| generate_settings_matrix | Man page Source code |
| get_cluster_df | Man page Source code |
| get_cluster_solutions | Man page Source code |
| get_clusters | Man page Source code |
| get_complete_uids | Man page Source code |
| get_dist_matrix | Man page Source code |
| get_dl_uids | Man page Source code |
| get_heatmap_order | Man page Source code |
| get_matrix_order | Man page Source code |
| get_mean_pval | Man page |
| get_min_pval | Man page Source code |
| get_pvals | Man page Source code |
| get_representative_solutions | Man page Source code |
| gexclude | Man page Source code |
| gower_distance | Man page Source code |
| gselect | Man page Source code |
| hamming_distance | Man page Source code |
| income | Man page |
| individual | Man page Source code |
| is_data_list | Man page Source code |
| jitter_plot | Man page Source code |
| label_meta_clusters | Man page Source code |
| label_prop | Man page Source code |
| label_propagate | Man page Source code |
| label_splits | Man page Source code |
| linear_adjust | Man page Source code |
| linear_model_pval | Man page |
| mc_manhattan_plot | Man page Source code |
| merge.ari_matrix | Source code |
| merge.clust_fns_list | Man page Source code |
| merge.data_list | Man page Source code |
| merge.dist_fns_list | Man page Source code |
| merge.ext_solutions_df | Man page Source code |
| merge.settings_df | Man page Source code |
| merge.sim_mats_list | Man page Source code |
| merge.snf_config | Man page Source code |
| merge.solutions_df | Man page Source code |
| merge.t_ext_solutions_df | Man page Source code |
| merge.t_solutions_df | Man page Source code |
| merge.weights_matrix | Man page Source code |
| merge_df_list | Man page Source code |
| meta_cluster_heatmap | Man page |
| metasnf | Man page |
| metasnf-package | Man page |
| metasnf_alert | Man page Source code |
| metasnf_defunct | Man page Source code |
| metasnf_deprecated | Man page Source code |
| metasnf_error | Man page Source code |
| metasnf_warning | Man page Source code |
| methylation_df | Man page |
| mock_ari_matrix | Man page |
| mock_clust_fns_list | Man page |
| mock_data_list | Man page |
| mock_dist_fns_list | Man page |
| mock_ext_solutions_df | Man page |
| mock_mc_solutions_df | Man page |
| mock_rep_solutions_df | Man page |
| mock_settings_df | Man page |
| mock_snf_config | Man page |
| mock_solutions_df | Man page |
| mock_t_solutions_df | Man page |
| mock_weights_matrix | Man page |
| n_features | Man page Source code |
| n_features.data_list | Source code |
| n_observations | Man page Source code |
| n_observations.data_list | Source code |
| new_ari_matrix | Man page Source code |
| new_clust_fns_list | Man page Source code |
| new_data_list | Man page Source code |
| new_dist_fns_list | Man page Source code |
| new_ext_solutions_df | Man page Source code |
| new_settings_df | Man page Source code |
| new_sim_mats_list | Man page Source code |
| new_snf_config | Man page Source code |
| new_solutions_df | Man page Source code |
| new_weights_matrix | Man page Source code |
| not_shown_message | Man page Source code |
| numcol_to_numeric | Man page Source code |
| ord_reg_pval | Man page |
| parallel_batch_snf | Man page Source code |
| pick_cols | Man page Source code |
| pl | Man page Source code |
| plot.ari_matrix | Man page Source code |
| plot.clust_fns_list | Source code |
| plot.data_list | Man page Source code |
| plot.dist_fns_list | Source code |
| plot.ext_solutions_df | Man page Source code |
| plot.settings_df | Man page |
| plot.sim_mats_list | Source code |
| plot.snf_config | Man page Source code |
| plot.solutions_df | Man page Source code |
| plot.t_ext_solutions_df | Man page Source code |
| plot.t_solutions_df | Man page Source code |
| plot.weights_matrix | Man page |
| prefix_dll_uid | Man page Source code |
| print.ari_matrix | Man page Source code |
| print.clust_fns_list | Man page Source code |
| print.data_list | Man page Source code |
| print.dist_fns_list | Man page Source code |
| print.ext_solutions_df | Man page Source code |
| print.settings_df | Man page Source code |
| print.sim_mats_list | Man page Source code |
| print.snf_config | Man page Source code |
| print.solutions_df | Man page Source code |
| print.t_ext_solutions_df | Man page Source code |
| print.t_solutions_df | Man page Source code |
| print.weights_matrix | Man page Source code |
| print_with_n_message | Man page Source code |
| print_with_t_message | Man page Source code |
| pubertal | Man page |
| pval_heatmap | Man page Source code |
| quality_measures | Man page |
| random_removal | Man page Source code |
| rbind.ari_matrix | Source code |
| rbind.clust_fns_list | Source code |
| rbind.data_list | Source code |
| rbind.dist_fns_list | Source code |
| rbind.ext_solutions_df | Man page Source code |
| rbind.sim_mats_list | Source code |
| rbind.snf_config | Source code |
| rbind.solutions_df | Man page Source code |
| rbind.t_solutions_df | Man page Source code |
| rbind.weights_matrix | Man page Source code |
| remove_dll_incomplete | Man page Source code |
| rename_dl | Man page Source code |
| reorder_dl_uids | Man page Source code |
| resample | Man page Source code |
| run_snf | Man page Source code |
| save_heatmap | Man page Source code |
| scale_diagonals | Man page Source code |
| settings_df | Man page Source code |
| sew_euclidean_distance | Man page Source code |
| shiny_annotator | Man page Source code |
| sim_mats_list | Man page Source code |
| sim_mats_list.default | Source code |
| sim_mats_list.ext_solutions_df | Source code |
| sim_mats_list.solutions_df | Source code |
| similarity_matrix_heatmap | Man page Source code |
| similarity_matrix_path | Man page Source code |
| siw_euclidean_distance | Man page Source code |
| sn_euclidean_distance | Man page Source code |
| snf_config | Man page Source code |
| snf_scheme | Man page |
| snf_step | Man page Source code |
| sol_df_col_order | Man page |
| solutions_df | Man page Source code |
| spectral_eigen | Man page Source code |
| spectral_eigen_classic | Man page Source code |
| spectral_eight | Man page Source code |
| spectral_five | Man page Source code |
| spectral_four | Man page Source code |
| spectral_nine | Man page Source code |
| spectral_rot | Man page Source code |
| spectral_rot_classic | Man page Source code |
| spectral_seven | Man page Source code |
| spectral_six | Man page Source code |
| spectral_ten | Man page Source code |
| spectral_three | Man page Source code |
| spectral_two | Man page Source code |
| split_parser | Man page Source code |
| str.ari_matrix | Man page Source code |
| str.clust_fns_list | Man page Source code |
| str.data_list | Man page Source code |
| str.dist_fns_list | Man page Source code |
| str.ext_solutions_df | Man page Source code |
| str.settings_df | Man page Source code |
| str.sim_mats_list | Man page Source code |
| str.snf_config | Man page Source code |
| str.solutions_df | Man page Source code |
| str.t_ext_solutions_df | Man page Source code |
| str.t_solutions_df | Man page Source code |
| str.weights_matrix | Man page Source code |
| subc_v | Man page |
| subsample_dl | Man page Source code |
| subsample_pairwise_aris | Man page Source code |
| summarize_clust_fns_list | Man page Source code |
| summarize_dfl | Man page Source code |
| summarize_dl | Man page Source code |
| summarize_pvals | Man page Source code |
| summary.ari_matrix | Man page Source code |
| summary.clust_fns_list | Man page Source code |
| summary.data_list | Man page Source code |
| summary.dist_fns_list | Man page Source code |
| summary.ext_solutions_df | Man page Source code |
| summary.settings_df | Man page Source code |
| summary.sim_mats_list | Man page Source code |
| summary.snf_config | Man page Source code |
| summary.solutions_df | Man page Source code |
| summary.t_ext_solutions_df | Man page Source code |
| summary.t_solutions_df | Man page Source code |
| summary.weights_matrix | Man page Source code |
| summary_features | Man page Source code |
| summary_features.ext_solutions_df | Source code |
| t.ari_matrix | Source code |
| t.clust_fns_list | Source code |
| t.data_list | Source code |
| t.dist_fns_list | Source code |
| t.ext_solutions_df | Source code |
| t.settings_df | Source code |
| t.sim_mats_list | Source code |
| t.snf_config | Source code |
| t.solutions_df | Source code |
| t.t_ext_solutions_df | Source code |
| train_test_assign | Man page Source code |
| two_step_merge | Man page Source code |
| uids | Man page Source code |
| uids.data_list | Source code |
| uids.default | Source code |
| uids.ext_solutions_df | Source code |
| uids.sim_mats_list | Source code |
| uids.solutions_df | Source code |
| uids.t_ext_solutions_df | Source code |
| uids.t_solutions_df | Source code |
| validate_ari_matrix | Man page Source code |
| validate_clust_fns_list | Man page Source code |
| validate_data_list | Man page Source code |
| validate_dist_fns_list | Man page Source code |
| validate_ext_solutions_df | Man page Source code |
| validate_settings_df | Man page Source code |
| validate_sim_mats_list | Man page Source code |
| validate_snf_config | Man page Source code |
| validate_solutions_df | Man page Source code |
| validate_weights_matrix | Man page Source code |
| var_manhattan_plot | Man page Source code |
| weights_matrix | Man page Source code |
