soil_metab: Microtable object of non-targeted metabolome data from bulk...
In microeco: Microbial Community Ecology Data Analysis
soil_metab R Documentation
Microtable object of non-targeted metabolome data from bulk soil and maize rhizosphere soil
in an agricultural field experiment with crop rotation and fertilization treatments (DOI: 10.1007/s11104-024-06847-9).
Description
For the explanation of each column of sample_table, please refer to the soil_microb data document.
In tax_table, 'HMDB_ID' is the number of HMDB database. 'KEGG_ID' is the number of KEGG database.
sample_table: sample information table
otu_table: metabolites abundance table
tax_table: annotation table
Usage
data(soil_metab)
Format
R6 class object
microeco documentation built on Oct. 20, 2026, 9:06 a.m.
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| soil_metab | R Documentation |
Microtable object of non-targeted metabolome data from bulk soil and maize rhizosphere soil in an agricultural field experiment with crop rotation and fertilization treatments (DOI: 10.1007/s11104-024-06847-9).
Description
For the explanation of each column of sample_table, please refer to the soil_microb data document.
In tax_table, 'HMDB_ID' is the number of HMDB database. 'KEGG_ID' is the number of KEGG database.
sample_table: sample information table
otu_table: metabolites abundance table
tax_table: annotation table
Usage
data(soil_metab)
Format
R6 class object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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