mixAK: Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering

Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.

Install the latest version of this package by entering the following in R:
install.packages("mixAK")
AuthorArnošt Komárek <arnost.komarek@mff.cuni.cz>
Date of publication2017-03-16 08:44:16
MaintainerArnošt Komárek <arnost.komarek@mff.cuni.cz>
LicenseGPL (>= 3)
Version5.0
http://msekce.karlin.mff.cuni.cz/~komarek

View on CRAN

Man pages

Acidity: Acidity index of lakes in North-Central Wisconsin

autolayout: Automatic layout for several plots in one figure

BLA: Best linear approximation with respect to the mean square...

BsBasis: B-spline basis

cbplot: Plot a function together with its confidence/credible bands

Dirichlet: Dirichlet distribution

Enzyme: Enzymatic activity in the blood

Faithful: Old Faithful Geyser Data

fitted.GLMMMCMC: Fitted profiles in the GLMM model

Galaxy: Velocities of distant galaxies

generatePermutations: Generate all permutations of (1, ..., K)

getProfiles: Individual longitudinal profiles of a given variable

GLMMlongitDA: Discriminant analysis for longitudinal profiles based on...

GLMMlongitDA2: Discriminant analysis for longitudinal profiles based on...

GLMMMCMC: MCMC estimation of a (multivariate) generalized linear mixed...

GLMMMCMCdata: Data manipulation for the GLMM_MCMC function

GLMMMCMCifit: Initial (RE)ML fits for the GLMM_MCMC function

GLMMMCMCinit.alpha: Handle init.alpha or init2.alpha argument of GLMM_MCMC...

GLMMMCMCinit.b: Handle init.b or init2.b argument of GLMM_MCMC function

GLMMMCMCinit.eps: Handle init.eps or init2.eps argument of GLMM_MCMC function

GLMMMCMCprior.alpha: Handle prior.alpha argument of GLMM_MCMC function

GLMMMCMCprior.b: Handle prior.eps argument of GLMM_MCMC function

GLMMMCMCprior.eps: Handle prior.eps argument of GLMM_MCMC function

GLMMMCMCscale.b: Handle scale.b argument of GLMM_MCMC function

GLMMMCMCwrapper: Wrapper to the GLMM_MCMC main simulation.

MatMPpinv: Moore-Penrose pseudoinverse of a squared matrix

MatSqrt: Square root of a matrix

MVN: Multivariate normal distribution

MVNmixture: Mixture of (multivariate) normal distributions

MVT: Multivariate Student t distribution

NMixChainComp: Chains for mixture parameters

NMixChainsDerived: Create MCMC chains derived from previously sampled values

NMixCluster: Clustering based on the MCMC output of the mixture model

NMixEM: EM algorithm for a homoscedastic normal mixture

NMixMCMC: MCMC estimation of (multivariate) normal mixtures with...

NMixMCMCdata: Data manipulation for the NMixMCMC function

NMixMCMCinitr: Initial component allocations for the NMixMCMC function

NMixMCMCinity: Initial values of censored observations for the NMixMCMC...

NMixMCMCwrapper: Wrapper to the NMixMCMC main simulation.

NMixPlugCondDensJoint2: Pairwise bivariate conditional densities: plug-in estimate

NMixPlugCondDensMarg: Univariate conditional densities: plug-in estimate

NMixPlugDA: Discriminant analysis based on plug-in estimates from the...

NMixPlugDensJoint2: Pairwise bivariate densities: plug-in estimate

NMixPlugDensMarg: Marginal (univariate) densities: plug-in estimate

NMixPredCDFMarg: Marginal (univariate) predictive cumulative distribution...

NMixPredCondCDFMarg: Univariate conditional predictive cumulative distribution...

NMixPredCondDensJoint2: Pairwise bivariate conditional predictive densities

NMixPredCondDensMarg: Univariate conditional predictive density

NMixPredDA: Discriminant analysis based on MCMC output from the mixture...

NMixPredDensJoint2: Pairwise bivariate predictive density

NMixPredDensMarg: Marginal (univariate) predictive density

NMixPseudoGOF: Pseudo goodness-of-fit test for a normal mixture model

NMixRelabel: Re-labeling the MCMC output of the mixture model

NMixRelabelAlgorithm: Argument manipulation for the NMixRelabel functions

NMixSummComp: Summary for the mixture components

PBC910: Subset of Mayo Clinic Primary Biliary Cirrhosis data

PBCseq: Mayo Clinic Primary Biliary Cirrhosis, sequential data

plot.NMixPlugCondDensJoint2: Plot computed pairwise bivariate conditional densities...

plot.NMixPlugCondDensMarg: Plot computed univariate conditional densities (plug-in...

plot.NMixPlugDensJoint2: Plot computed marginal pairwise bivariate densities (plug-in...

plot.NMixPlugDensMarg: Plot computed marginal predictive densities

plot.NMixPredCDFMarg: Plot computed marginal predictive cumulative distribution...

plot.NMixPredCondCDFMarg: Plot computed univariate conditional predictive cumulative...

plot.NMixPredCondDensJoint2: Plot computed predictive pairwise bivariate conditional...

plot.NMixPredCondDensMarg: Plot computed univariate conditional predictive densities

plot.NMixPredDensJoint2: Plot computed marginal pairwise bivariate predictive...

plot.NMixPredDensMarg: Plot computed marginal predictive densities

plotProfiles: Plot individual longitudinal profiles

rRotationMatrix: Random rotation matrix

rSamplePair: Sample a pair (with replacement)

SimData: Simulated dataset

SP2Rect: Conversion of a symmetric matrix stored in a packed format...

summaryDiff: Posterior summary statistics for a difference of two...

Tandmob: Signal Tandmobiel data

TandmobEmer: Signal Tandmobiel data - emergence times

TMVN: Truncated multivariate normal distribution

TNorm: Truncated normal distribution

tracePlots: Traceplots for selected parameters

Wishart: Wishart distribution

Y2T: Transform fitted distribution of Y=trans(T) into distribution...

Functions

Acidity Man page
autolayout Man page
BLA Man page
BsBasis Man page
C_BLA Man page
cbplot Man page
C_deriv_ldMVT_x Man page
C_dmixMVN_R Man page
C_dmixNorm_R Man page
C_dMVN1_R Man page
C_dMVT1_R Man page
C_generatePermutations Man page
C_GLMM_longitDA Man page
C_GLMM_longitDA2 Man page
C_GLMM_MCMC Man page
C_GLMM_NMixRelabel Man page
C_GLMM_PED Man page
C_ldWishart_R Man page
C_MPpinvSP Man page
C_NMix_ChainsDerived Man page
C_NMix_MCMC Man page
C_NMix_NMixRelabel Man page
C_NMix_PED Man page
C_NMix_PredCDFMarg Man page
C_NMix_PredCondDensCDFMarg Man page
C_NMix_PredCondDensJoint2 Man page
C_NMix_PredDA Man page
C_NMix_PredDensJoint2 Man page
C_NMix_PredDensMarg Man page
C_rDirichlet_R Man page
C_rmixMVN_R Man page
C_rmixNorm_R Man page
C_rMVN1_R Man page
C_rMVN2_R Man page
C_rMVT1_R Man page
C_RotationMatrix_R Man page
C_rTMVN1_R Man page
C_rTNorm1_R Man page
C_rWishart_R Man page
C_SamplePair_R Man page
C_sqrtGE Man page
Dirichlet Man page
dMVN Man page
dMVNmixture Man page
dMVNmixture2 Man page
dMVT Man page
dWISHART Man page
Enzyme Man page
Faithful Man page
fitted.GLMM_MCMC Man page
Galaxy Man page
generatePermutations Man page
getProfiles Man page
GLMM_longitDA Man page
GLMM_longitDA2 Man page
GLMM_MCMC Man page
GLMM_MCMCdata Man page
GLMM_MCMCifit Man page
GLMM_MCMCinit.alpha Man page
GLMM_MCMCinit.b Man page
GLMM_MCMCinit.eps Man page
GLMM_MCMCprior.alpha Man page
GLMM_MCMCprior.b Man page
GLMM_MCMCprior.eps Man page
GLMM_MCMCscale.b Man page
GLMM_MCMCwrapper Man page
MatMPpinv Man page
MatSqrt Man page
MVN Man page
MVNmixture Man page
MVT Man page
NMixChainComp Man page
NMixChainComp.default Man page
NMixChainComp.GLMM_MCMC Man page
NMixChainComp.NMixMCMC Man page
NMixChainsDerived Man page
NMixCluster Man page
NMixCluster.default Man page
NMixCluster.GLMM_MCMC Man page
NMixEM Man page
NMixMCMC Man page
NMixMCMCdata Man page
NMixMCMCinitr Man page
NMixMCMCinity Man page
NMixMCMCwrapper Man page
NMixPlugCondDensJoint2 Man page
NMixPlugCondDensJoint2.default Man page
NMixPlugCondDensJoint2.GLMM_MCMC Man page
NMixPlugCondDensJoint2.NMixMCMC Man page
NMixPlugCondDensMarg Man page
NMixPlugCondDensMarg.default Man page
NMixPlugCondDensMarg.GLMM_MCMC Man page
NMixPlugCondDensMarg.NMixMCMC Man page
NMixPlugDA Man page
NMixPlugDensJoint2 Man page
NMixPlugDensJoint2.default Man page
NMixPlugDensJoint2.GLMM_MCMC Man page
NMixPlugDensJoint2.NMixMCMC Man page
NMixPlugDensMarg Man page
NMixPlugDensMarg.default Man page
NMixPlugDensMarg.GLMM_MCMC Man page
NMixPlugDensMarg.NMixMCMC Man page
NMixPredCDFMarg Man page
NMixPredCDFMarg.default Man page
NMixPredCDFMarg.GLMM_MCMC Man page
NMixPredCDFMarg.NMixMCMC Man page
NMixPredCondCDFMarg Man page
NMixPredCondCDFMarg.default Man page
NMixPredCondCDFMarg.GLMM_MCMC Man page
NMixPredCondCDFMarg.NMixMCMC Man page
NMixPredCondDensJoint2 Man page
NMixPredCondDensJoint2.default Man page
NMixPredCondDensJoint2.GLMM_MCMC Man page
NMixPredCondDensJoint2.NMixMCMC Man page
NMixPredCondDensMarg Man page
NMixPredCondDensMarg.default Man page
NMixPredCondDensMarg.GLMM_MCMC Man page
NMixPredCondDensMarg.NMixMCMC Man page
NMixPredDA Man page
NMixPredDensJoint2 Man page
NMixPredDensJoint2.default Man page
NMixPredDensJoint2.GLMM_MCMC Man page
NMixPredDensJoint2.NMixMCMC Man page
NMixPredDensMarg Man page
NMixPredDensMarg.default Man page
NMixPredDensMarg.GLMM_MCMC Man page
NMixPredDensMarg.NMixMCMC Man page
NMixPseudoGOF Man page
NMixPseudoGOF.default Man page
NMixPseudoGOF.NMixMCMC Man page
NMixRelabel Man page
NMixRelabelAlgorithm Man page
NMixRelabel.default Man page
NMixRelabel.GLMM_MCMC Man page
NMixRelabel.GLMM_MCMClist Man page
NMixRelabel.NMixMCMC Man page
NMixRelabel.NMixMCMClist Man page
NMixSummComp Man page
NMixSummComp.default Man page
NMixSummComp.GLMM_MCMC Man page
NMixSummComp.NMixMCMC Man page
PBC910 Man page
PBCseq Man page
plot.NMixPlugCondDensJoint2 Man page
plot.NMixPlugCondDensMarg Man page
plot.NMixPlugDensJoint2 Man page
plot.NMixPlugDensMarg Man page
plot.NMixPredCDFMarg Man page
plot.NMixPredCondCDFMarg Man page
plot.NMixPredCondDensJoint2 Man page
plot.NMixPredCondDensMarg Man page
plot.NMixPredDensJoint2 Man page
plot.NMixPredDensMarg Man page
plotProfiles Man page
print.GLMM_MCMC Man page
print.GLMM_MCMClist Man page
print.NMixEM Man page
print.NMixMCMC Man page
print.NMixMCMClist Man page
rcMVN Man page
rDirichlet Man page
rMVN Man page
rMVNmixture Man page
rMVNmixture2 Man page
rMVT Man page
rRotationMatrix Man page
rSamplePair Man page
rTMVN Man page
rTNorm Man page
rWISHART Man page
SimData Man page
SP2Rect Man page
summaryDiff Man page
Tandmob Man page
TandmobEmer Man page
TMVN Man page
TNorm Man page
tracePlots Man page
tracePlots.default Man page
tracePlots.GLMM_MCMC Man page
tracePlots.GLMM_MCMClist Man page
tracePlots.NMixMCMC Man page
tracePlots.NMixMCMClist Man page
Wishart Man page
Y2T Man page
Y2T.NMixPlugCondDensJoint2 Man page
Y2T.NMixPlugCondDensMarg Man page
Y2T.NMixPlugDensJoint2 Man page
Y2T.NMixPlugDensMarg Man page
Y2T.NMixPredCDFMarg Man page
Y2T.NMixPredCondCDFMarg Man page
Y2T.NMixPredCondDensJoint2 Man page
Y2T.NMixPredCondDensMarg Man page
Y2T.NMixPredDensJoint2 Man page
Y2T.NMixPredDensMarg Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/index.html
inst/doc/Tandmob.R inst/doc/Faithful.R
inst/doc/CITATION_includeMethodology
inst/doc/Galaxy.R
inst/doc/bodybg.jpg
inst/doc/PBCseq.R
inst/doc/arnost02.css
inst/doc/menuhover.jpg
src
src/NMix_Utils.cpp
src/NMix_PredCDFMarg.h
src/GLMM_scale_ZitZi.h
src/AK_Complex.h
src/AK_Basic.h
src/GLMM_create_SZitZiS.h
src/MCMC_Moments_NormalApprox.h
src/Misc_generatePermutations.h
src/00mixAK_init.cpp
src/NMix_PED.cpp
src/Dist_TmixMVN.cpp
src/Makevars
src/GLMM_copy_shift_eta_meanY_Zresp.h
src/Stat_Quantile.h
src/NMix_orderComp.cpp
src/NMix_Stephens_step2_transport.h
src/NMix_RJMCMCsplit.h
src/GLMM.h
src/GLMM_updateFixEf.h
src/GLMM_longitDA2.cpp
src/Dist_TMVN.h
src/GLMM_longitDA.h
src/GLMM_longitPred_nmix_gauss.cpp
src/NMix_RJMCMC_logJacLambdaVSigma.h
src/GLMM_updateRanEf.cpp
src/Rand_RotationMatrix.h
src/NMix_RJMCMCdeath.h
src/GLMM_eta_fixed_random2eta_meanY.h
src/GLMM_eta_fixed_random2eta_meanY.cpp
src/GLMM_newData.h
src/NMix_Deviance.h
src/NMix_Pr_y_and_cum_Pr_y.cpp
src/GLMM_create_SZitZiS_4longitDA.h
src/Dist_mixNorm.cpp
src/GLMM_fitted_Bernoulli_Logit.h
src/Dist_Wishart.cpp
src/AK_BSTAT.cpp
src/GLMM_updateFixEf.cpp
src/NMix_RJMCMC_aux_vector_u.h
src/NMix_updateWeights.h
src/Dist_Dirichlet.h
src/NMix_Stephens_step2_search.cpp
src/Misc_findIndexOfPermutation.cpp
src/NMix_Stephens_costMatrix.cpp
src/GLMM_updateHyperVars_eps.h
src/GLMM_create_XtX.cpp
src/NMix_updateHyperVars.h
src/GLMM_updateRanEf_QR.h
src/GLMM_PED.h
src/Dist_Wishart.h
src/LogLik_Bernoulli_Logit.h
src/NMix_MCMC.cpp
src/Stat_BLA.cpp
src/GLMM_Deviance.h
src/MCMC.h
src/GLMM_linear_predictors.h
src/Dist_MVN.h
src/Dist_TMVN.cpp
src/AK_Utils.h
src/GLMM_longitPred_nmix_gauss.h
src/NMix_Stephens_step2_search.h
src/NMix_PredDA.h
src/Dist_TmixNorm.cpp
src/NMix_updateAlloc.h
src/NMix_RJMCMCcombine.h
src/NMix_RJMCMCbirth.cpp
src/Stat_BLA.h
src/NMix_PED_coreMulti.h
src/GLMM_updateHyperVars_eps.cpp
src/NMix_updateCensObs.h
src/NMix_Stephens_step2_transport.cpp
src/AK_BLAS.h
src/LogLik_Gauss_Identity.h
src/NMix_NMixRelabel.h
src/NMix_PredDensMarg.h
src/Stat_Quantile.cpp
src/NMix_PED_coreUni.h
src/NMix_PredDensJoint2.cpp
src/NMix_PED_coreMulti.cpp
src/NMix_ChainsDerived.h
src/MCMC_Moments_NormalApprox_QR.h
src/GLMM_newData.cpp
src/NMix_PosterMeanMixParam.cpp
src/GLMM_create_SZitZiS.cpp
src/GLMM_create_ZiS.h
src/GLMM_fitted_Poisson_Log.cpp
src/MCMC_loglik_Zwork1_stres.h
src/GLMM_scale_ZitZi.cpp
src/LogLik_Bernoulli_Logit.cpp
src/GLMM_create_ZiS.cpp
src/NMix_RJMCMCdeath.cpp
src/GLMM_MCMC.cpp
src/NMix_update_sum_Ir_and_sum_Pr_y.cpp
src/GLMM_dY_meanY.cpp
src/Dist_MVT.cpp
src/NMix_PosterMeanMixParam.h
src/Dist_mixNorm.h
src/Misc_generatePermutations.cpp
src/NMix_RJMCMC_logJac_part3.cpp
src/Dist_TmixMVN.h
src/NMix_PredCDFMarg.cpp
src/MCMC_Moments_NormalApprox_QR.cpp
src/NMix_PredDensJoint2.h
src/Dist_MVN.cpp
src/NMix_PredCondDensJoint2.h
src/GLMM_fitted_Poisson_Log.h
src/NMix_reorder_Pr_y.h
src/GLMM_Deviance2.cpp
src/GLMM_fitted_Bernoulli_Logit.cpp
src/MCMC_Moments_NormalApprox.cpp
src/NMix_sum_Ir.h
src/GLMM_updateRanEf.h
src/NMix_Utils.h
src/NMix_PED_coreUni.cpp
src/GLMM_NMixRelabel.h
src/NMix_RJMCMCbirth.h
src/Rand_SamplePair.h
src/NMix_fullCondMean_WeightsMeansVars.cpp
src/NMix_updateHyperVars.cpp
src/GLMM_create_XtX.h
src/NMix_Stephens_step1.cpp
src/LogLik_Gauss_Identity.cpp
src/GLMM_Deviance2Pr_obs.h
src/GLMM_updateVars_eps.h
src/NMix_MCMC.h
src/NMix_update_sum_Ir_and_sum_Pr_y.h
src/Dist_TNorm.cpp
src/NMix_RJMCMC_logJacLambdaVSigma.cpp
src/NMix_RJMCMC_aux_vector_u.cpp
src/NMix_Stephens_costMatrix.h
src/GLMM_updateRanEf_QR.cpp
src/NMix_RJMCMC_logJac_part3.h
src/GLMM_PED.cpp
src/Dist_TNorm.h
src/NMix_Stephens_step1.h
src/NMix_RJMCMCcombine.cpp
src/Rand_SamplePair.cpp
src/Dist_Dirichlet.cpp
src/LogLik_Poisson_Log.h
src/NMix_ChainsDerived.cpp
src/NMix_PED.h
src/AK_LAPACK.cpp
src/Dist_MVT.h
src/AK_BLAS.cpp
src/NMix_orderComp.h
src/NMix_updateCensObs.cpp
src/GLMM_create_ZS.cpp
src/Dist_Discrete.cpp
src/NMix_Deviance.cpp
src/LogLik_Poisson_Log.cpp
src/NMix_PredCondDensJoint2.cpp
src/NMix_updateAlloc.cpp
src/MCMC_loglik_Zwork1_stres.cpp
src/NMix_RJMCMCsplit.cpp
src/GLMM_create_SZitZiS_4longitDA.cpp
src/Dist_TmixNorm.h
src/NMix_PredCondDensCDFMarg.h
src/NMix.h
src/Dist_mixMVN.cpp
src/NMix_Pr_y_and_cum_Pr_y.h
src/GLMM_MCMC.h
src/NMix_updateWeights.cpp
src/NMix_updateMeansVars.cpp
src/AK_Utils.cpp
src/NMix_PredDA.cpp
src/NMix_updateMeansVars.h
src/GLMM_longitDA2.h
src/GLMM_linear_predictors.cpp
src/GLMM_Deviance2.h
src/NMix_PredDensMarg.cpp
src/GLMM_NMixRelabel.cpp
src/GLMM_longitDA.cpp
src/GLMM_create_ZS.h
src/GLMM_dY_meanY.h
src/AK_LAPACK.h
src/NMix_fullCondMean_WeightsMeansVars.h
src/Rand_RotationMatrix.cpp
src/NMix_PredCondDensCDFMarg.cpp
src/Dist_mixMVN.h
src/GLMM_updateVars_eps.cpp
src/Misc_findIndexOfPermutation.h
src/NMix_NMixRelabel.cpp
src/NMix_reorder_Pr_y.cpp
src/GLMM_copy_shift_eta_meanY_Zresp.cpp
src/GLMM_Deviance2Pr_obs.cpp
src/AK_BSTAT.h
src/GLMM_Deviance.cpp
src/NMix_sum_Ir.cpp
src/Dist_Discrete.h
NAMESPACE
NEWS
data
data/PBCseq.rda
data/Faithful.rda
data/Tandmob.rda
data/Galaxy.rda
data/TandmobEmer.rda
data/Acidity.rda
data/PBC910.rda
data/Enzyme.rda
data/SimData.rda
R
R/rMVNmixture2.R R/NMixPredCondDensMarg.GLMM_MCMC.R R/plot.NMixPredCondCDFMarg.R R/Y2T.NMixPlugDensJoint2.R R/rWISHART.R R/plot.NMixPlugDensJoint2.R R/plot.NMixPredDensMarg.R R/dMVNmixture.R R/GLMM_MCMCprior.b.R R/NMixSummComp.NMixMCMC.R R/NMixChainComp.R R/NMixPredDensMarg.R R/NMixRelabel.R R/NMixRelabelAlgorithm.R R/rSamplePair.R R/dMVT.R R/NMixMCMC.R R/rcMVN.R R/cbplot.R R/NMixPlugCondDensJoint2.NMixMCMC.R R/dWISHART.R R/BLA.R R/NMixPlugDensJoint2.GLMM_MCMC.R R/plot.NMixPredCondDensJoint2.R R/SP2Rect.R R/NMixPlugDensMarg.NMixMCMC.R R/tracePlots.GLMM_MCMC.R R/NMixPlugCondDensJoint2.GLMM_MCMC.R R/dMVN.R R/NMixPredCondDensJoint2.default.R R/tracePlots.R R/GLMM_MCMCprior.eps.R R/NMixPlugCondDensMarg.default.R R/summaryDiff.R R/NMixPredDensJoint2.GLMM_MCMC.R R/NMixPredCDFMarg.default.R R/NMixPseudoGOF.R R/plot.NMixPlugCondDensJoint2.R R/plotProfiles.R R/NMixPlugDensMarg.GLMM_MCMC.R R/NMixPseudoGOF.default.R R/NMixSummComp.default.R R/rTNorm.R R/generatePermutations.R R/NMixRelabel.default.R R/GLMM_MCMCdata.R R/NMixPredCondDensJoint2.NMixMCMC.R R/print.NMixMCMC.R R/NMixRelabel.GLMM_MCMC.R R/rMVT.R R/GLMM_MCMC.R R/NMixSummComp.GLMM_MCMC.R R/Y2T.NMixPredCondDensJoint2.R R/NMixPlugDensJoint2.R R/NMixChainsDerived.R R/NMixPredCondCDFMarg.R R/NMixPlugDensJoint2.NMixMCMC.R R/NMixChainComp.GLMM_MCMC.R R/NMixRelabel.NMixMCMClist.R R/rMVNmixture.R R/print.GLMM_MCMClist.R R/Y2T.NMixPredDensMarg.R R/GLMM_longitDA.R R/plot.NMixPredDensJoint2.R R/NMixRelabel.NMixMCMC.R R/NMixPredCDFMarg.R R/dMVNmixture2.R R/print.NMixEM.R R/NMixPredCondDensMarg.R R/NMixPredCondDensMarg.NMixMCMC.R R/NMixPredCondDensMarg.default.R R/GLMM_MCMCprior.alpha.R R/getProfiles.R R/Y2T.NMixPredDensJoint2.R R/NMixPredDensJoint2.default.R R/NMixPlugDA.R R/NMixPredCondDensJoint2.R R/Y2T.NMixPredCondCDFMarg.R R/GLMM_MCMCifit.R R/Y2T.NMixPlugCondDensJoint2.R R/NMixPredCondCDFMarg.GLMM_MCMC.R R/NMixPlugDensMarg.R R/NMixPlugCondDensJoint2.default.R R/tracePlots.NMixMCMC.R R/NMixChainComp.NMixMCMC.R R/MatMPpinv.R R/GLMM_longitDA2.R R/NMixPlugCondDensMarg.GLMM_MCMC.R R/rRotationMatrix.R R/NMixCluster.default.R R/NMixPlugDensMarg.default.R R/NMixPredDensMarg.GLMM_MCMC.R R/NMixPredCondCDFMarg.NMixMCMC.R R/plot.NMixPredCondDensMarg.R R/autolayout.R R/NMixPredCondDensJoint2.GLMM_MCMC.R R/NMixRelabel.GLMM_MCMClist.R R/NMixPredDA.R R/BsBasis.R R/NMixPlugDensJoint2.default.R R/Y2T.R R/NMixCluster.R R/NMixPredDensMarg.default.R R/NMixPseudoGOF.NMixMCMC.R R/NMixCluster.GLMM_MCMC.R R/print.NMixMCMClist.R R/NMixPlugCondDensMarg.NMixMCMC.R R/rDirichlet.R R/fitted.GLMM_MCMC.R R/NMixPredCDFMarg.GLMM_MCMC.R R/rMVN.R R/tracePlots.default.R R/NMixPlugCondDensMarg.R R/tracePlots.NMixMCMClist.R R/NMixPredCondCDFMarg.default.R R/GLMM_MCMCscale.b.R R/NMixEM.R R/GLMM_MCMCwrapper.R R/MatSqrt.R R/GLMM_MCMCinit.alpha.R R/NMixMCMCinity.R R/NMixSummComp.R R/NMixPredCDFMarg.NMixMCMC.R R/plot.NMixPlugDensMarg.R R/print.GLMM_MCMC.R R/NMixPlugCondDensJoint2.R R/GLMM_MCMCinit.b.R R/NMixPredDensJoint2.NMixMCMC.R R/Y2T.NMixPlugCondDensMarg.R R/NMixMCMCwrapper.R R/rTMVN.R R/Y2T.NMixPredCondDensMarg.R R/NMixMCMCinitr.R R/Y2T.NMixPredCDFMarg.R R/NMixPredDensJoint2.R R/NMixMCMCdata.R R/NMixChainComp.default.R R/plot.NMixPlugCondDensMarg.R R/tracePlots.GLMM_MCMClist.R R/zzz.R R/GLMM_MCMCinit.eps.R R/NMixPredDensMarg.NMixMCMC.R R/Y2T.NMixPlugDensMarg.R R/plot.NMixPredCDFMarg.R
MD5
DESCRIPTION
man
man/plot.NMixPlugDensMarg.Rd man/Enzyme.Rd man/MVN.Rd man/plotProfiles.Rd man/plot.NMixPredCondDensJoint2.Rd man/getProfiles.Rd man/SimData.Rd man/NMixMCMCdata.Rd man/NMixMCMCinity.Rd man/NMixPlugDA.Rd man/GLMMlongitDA.Rd man/GLMMMCMCdata.Rd man/NMixMCMCwrapper.Rd man/plot.NMixPredDensJoint2.Rd man/NMixMCMCinitr.Rd man/TMVN.Rd man/NMixPlugDensMarg.Rd man/NMixPredDensJoint2.Rd man/GLMMMCMC.Rd man/autolayout.Rd man/plot.NMixPlugCondDensMarg.Rd man/NMixRelabel.Rd man/plot.NMixPlugDensJoint2.Rd man/Galaxy.Rd man/BsBasis.Rd man/NMixPlugCondDensMarg.Rd man/rSamplePair.Rd man/NMixChainsDerived.Rd man/Y2T.Rd man/cbplot.Rd man/NMixEM.Rd man/NMixPredCondCDFMarg.Rd man/GLMMMCMCinit.b.Rd man/GLMMMCMCifit.Rd man/plot.NMixPredCDFMarg.Rd man/GLMMMCMCprior.alpha.Rd man/BLA.Rd man/Wishart.Rd man/plot.NMixPlugCondDensJoint2.Rd man/generatePermutations.Rd man/NMixPredCondDensMarg.Rd man/fitted.GLMMMCMC.Rd man/GLMMMCMCinit.eps.Rd man/MVNmixture.Rd man/NMixPredDensMarg.Rd man/GLMMMCMCprior.eps.Rd man/NMixMCMC.Rd man/NMixPredCondDensJoint2.Rd man/NMixChainComp.Rd man/Tandmob.Rd man/NMixPlugCondDensJoint2.Rd man/tracePlots.Rd man/NMixSummComp.Rd man/TNorm.Rd man/Dirichlet.Rd man/MatMPpinv.Rd man/NMixPlugDensJoint2.Rd man/GLMMlongitDA2.Rd man/plot.NMixPredCondDensMarg.Rd man/plot.NMixPredCondCDFMarg.Rd man/Acidity.Rd man/NMixPredDA.Rd man/summaryDiff.Rd man/plot.NMixPredDensMarg.Rd man/GLMMMCMCscale.b.Rd man/GLMMMCMCwrapper.Rd man/rRotationMatrix.Rd man/TandmobEmer.Rd man/PBC910.Rd man/PBCseq.Rd man/MVT.Rd man/NMixPseudoGOF.Rd man/NMixRelabelAlgorithm.Rd man/SP2Rect.Rd man/NMixCluster.Rd man/GLMMMCMCprior.b.Rd man/NMixPredCDFMarg.Rd man/Faithful.Rd man/MatSqrt.Rd man/GLMMMCMCinit.alpha.Rd

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