plotBursts: Plotting the centroids of a bursted track

In move: Visualizing and Analyzing Animal Track Data

Plotting the centroids of a bursted track

Description

The plotBursts function plots bursted Move objects (see burst for how to create a bursted Move object). The function plots a circle at the midpoint of each burst segment (consecutive coordinates that belong to a single burst).

Usage

  ## S4 method for signature 'list'
plotBursts(object, add=TRUE, 
            sizeFUN=function(x){as.numeric(diff(range(timestamps(x))),units ="mins")},
            col = NA, breaks = 3, ...)
            
  ## S4 method for signature '.MoveTrackSingleBurst'
plotBursts(object, add=TRUE,
            sizeFUN=function(x){as.numeric(diff(range(timestamps(x))),units ="mins")}, 
            col = NA, breaks = 3, ...)

Arguments

object	a moveBurst object or a list of moveBurst objects
add	logical, if FALSE a new plot is generated, default is TRUE
sizeFUN	a function to calculate the size of the plotted circles (see 'Details')
breaks	how many size classes should the circles have, default is 3
col	a vector of color codes with the same length as the burstID. By default the standard colors from 1:8 are used (see palette() to obtain vector of default colors). If there are more than 8 burstIDs the colors are recycled
...	additional plot attributes

Details

sizeFUN
The color of the circles correspond to the burstIDs. The size of the cycles can have different meanings, depending on what function is defined. By default the size refers to the relative time of the burst segment compared to the whole track. This argument accepts any personalized function.

Note

If a list of moveBurst objects is provided, the plots are plotted one after another, and not side by side.

Author(s)

Marco Smolla & Anne Scharf

Examples

data(leroy)
behav <- c(rep(1:4,each=200), rep(5, 118))
testb <- burst(leroy, f=behav)
plot(coordinates(leroy),type="l")
plotBursts(testb, breaks=3, add=TRUE, pch=19)
plotBursts(testb, breaks=5, add=FALSE, pch=19, col=rainbow(5))

## plotting circle size of a moveBurst track by realtive segment length
plotBursts(object=testb, breaks=3, sizeFUN=function(x){sum(distance(x))}, pch=19, add=FALSE)

move documentation built on Sept. 29, 2024, 9:06 a.m.