View source: R/QTL_effect_GE.R
QTL_effect_GE | R Documentation |
Estimate the QTL parental allelic effects within environment. The estimation
is performed using an exact mixed model with function from R package
nlme
. The significance of the allele effect is assessed using a
Wald test.
QTL_effect_GE( mppData, trait, VCOV = "UN", ref_par = NULL, QTL = NULL, maxIter = 100, msMaxIter = 100 )
mppData |
An object of class |
trait |
|
VCOV |
VCOV |
ref_par |
Optional |
QTL |
Object of class |
maxIter |
maximum number of iterations for the lme optimization algorithm. Default = 100. |
msMaxIter |
maximum number of iterations for the optimization step inside the lme optimization. Default = 100. |
Return:
Qeff |
|
Vincent Garin
Pinheiro J, Bates D, DebRoy S, Sarkar D, R Core Team (2021). nlme: Linear and Nonlinear Mixed Effects Models_. R package version 3.1-152, <URL: https://CRAN.R-project.org/package=nlme>.
data(mppData_GE) Qpos <- c("PZE.105068880", "PZE.106098900") Qeff <- QTL_effect_GE(mppData = mppData_GE, trait = c('DMY_CIAM', 'DMY_TUM'), QTL = Qpos) Qeff
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.