API for mppR
Multi-Parent Population QTL Analysis
| Global functions | |
|---|---|
| CV_partition | Man page Source code |
| IBD.mppData | Man page Source code |
| IBS.mppData | Man page Source code |
| IncMat_QTL_MAF | Source code |
| IncMat_cross | Source code |
| IncMat_parent | Source code |
| IncMat_sum0_const | Source code |
| MM_QTL | Source code |
| MM_comp | Source code |
| MQE_CIM | Source code |
| MQE_CIM_clu | Source code |
| MQE_R2 | Source code |
| MQE_forward | Source code |
| MQE_gen_effects | Man page Source code |
| MQE_plot | Source code |
| MQE_proc | Man page Source code |
| QC.mppData | Man page Source code |
| QC_GenotypingError | Source code |
| QC_MAF | Source code |
| QC_hetero | Source code |
| QC_matchMarker | Source code |
| QC_minCrSize | Source code |
| QC_missing | Source code |
| QC_tagMAFCr | Source code |
| QTLModelBack | Source code |
| QTLModelCIM | Source code |
| QTLModelCIM_MQE | Source code |
| QTLModelPerm | Source code |
| QTLModelQeff | Source code |
| QTLModelSIM | Source code |
| QTL_CI | Source code |
| QTL_R2 | Man page Source code |
| QTL_R2_GE | Man page Source code |
| QTL_effect_GE | Man page Source code |
| QTL_effect_QxEC | Man page Source code |
| QTL_effect_main_QxE | Man page Source code |
| QTL_forward | Man page Source code |
| QTL_gen_effects | Man page Source code |
| QTL_pred_R2 | Man page Source code |
| QTL_pval | Source code |
| QTL_report | Source code |
| QTL_report_GE | Source code |
| QTL_select | Man page Source code |
| Qeff_res_processing | Source code |
| Qeff_res_processing_MQE | Source code |
| Qprof_process | Source code |
| R2_lin | Source code |
| R2_lin_GE | Source code |
| R2_pred | Source code |
| USNAM_geno | Man page |
| USNAM_map | Man page |
| USNAM_pheno | Man page |
| W_QTL | Source code |
| W_test_Qpar_GxE | Source code |
| W_test_Qpar_main | Source code |
| check.MQE | Source code |
| check.cr.ABH | Source code |
| check.inf | Source code |
| check.model.comp | Source code |
| check.mpp.cv | Source code |
| check.mpp.proc | Source code |
| check_IBD | Source code |
| check_IBS | Source code |
| check_QC2 | Source code |
| check_mod_mppGE | Source code |
| check_mppData | Source code |
| check_ref_par | Source code |
| check_trait | Source code |
| cof_mat_reduce | Source code |
| color.code | Source code |
| create.mppData | Man page Source code |
| cross_ABH | Source code |
| cross_ABH_het | Source code |
| design_connectivity | Man page Source code |
| determine_Qmain_QxE_sign | Source code |
| form_QTLxEC_mat | Source code |
| formula_backward | Source code |
| geno_012 | Source code |
| getVCOV | Source code |
| inc_mat_QTL | Man page Source code |
| is_mppData | Source code |
| lme_comp | Source code |
| mdf_par_name | Source code |
| mppData | Man page |
| mppData_GE | Man page |
| mppData_add_pheno | Man page Source code |
| mppData_init | Man page |
| mppData_mdf_pheno | Man page Source code |
| mppGE_CIM | Man page Source code |
| mppGE_SIM | Man page Source code |
| mppGE_proc | Man page Source code |
| mpp_CIM | Man page Source code |
| mpp_CIM_clu | Source code |
| mpp_CV | Man page Source code |
| mpp_SIM | Man page Source code |
| mpp_SIM_clu | Source code |
| mpp_back_elim | Man page |
| mpp_forward | Man page Source code |
| mpp_perm | Man page Source code |
| mpp_proc | Man page Source code |
| par_clu | Man page |
| parent_cluster.mppData | Man page Source code |
| parent_clusterCheck | Source code |
| part.R2.diff.lin | Source code |
| part.R2.sg.lin | Source code |
| plot.QTLprof | Man page Source code |
| plot_CV | Source code |
| plot_QTLxEC | Man page Source code |
| plot_allele_eff_GE | Man page Source code |
| print.summary.QR2Res | Man page Source code |
| print.summary.QeffRes | Man page Source code |
| print.summary.mppData | Man page Source code |
| reference.count | Source code |
| remove_singularities | Source code |
| sel_trait | Source code |
| sign.star | Source code |
| subset.mppData | Man page Source code |
| summary.QR2Res | Man page Source code |
| summary.QeffRes | Man page Source code |
| summary.mppData | Man page Source code |
