Files in mppR
Multi-Parent Population QTL Analysis

MD5
NEWS.md
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/mppR_vignette.pdf inst/doc/mppR_vignette.R
inst/doc/mppR_vignette.rnw
vignettes/mppR_vignette.rnw
vignettes/bibliography/Bibliography_Bibtex.txt
vignettes/bibliography/Bibliography_Bibtex.bib
vignettes/figures/gen_eff.pdf
vignettes/figures/connectivity_example.jpg
vignettes/figures/QTL_profile.pdf
vignettes/figures/workflow2.jpg
vignettes/figures/plot_CV.pdf R/QTL_CI.R R/summary.mppData.R R/check.mpp.proc.R R/R2_pred.R R/QC_tagMAFCr.R R/MQE_CIM.R R/IncMat_cross.R R/print.summary.QR2Res.R R/check_IBD.R R/cross_ABH_het.R R/mpp_proc.R R/MQE_plot.R R/summary.QR2Res.R R/IBS.mppData.R R/IncMat_sum0_const.R R/QTLModelPerm.R R/reference.count.R R/check.inf.R R/mpp_back_elim.R R/QC_minCrSize.R R/QC_MAF.R R/QTLModelCIM.R R/IncMat_parent.R R/QTL_report.R R/QC_missing.R R/check.mpp.cv.R R/mpp_CV.R R/check.model.comp.R R/Qeff_res_processing_MQE.R R/Qeff_res_processing.R R/create.mppData.R R/mpp_CIM_clu.R R/plot_CV.R R/parent_cluster.mppData.R R/parent_clusterCheck.R R/QTLModelCIM_MQE.R R/design_connectectivity.R R/color.code.R R/check.MQE.R R/QTLModelBack.R R/MQE_BackElim.R R/MQE_CIM_clu.R R/cross_ABH.R R/sign.star.R R/R2_lin.R R/IncMat_QTL_MAF.R R/mpp_SIM.R R/plot.QTLprof.R R/QTL_pval.R R/QTL_pval_mix.R R/CV_partition.R R/check_QC2.R R/formula_backward.R R/inc_mat_QTL.R R/QTL_R2.R R/MQE_genEffects.R R/MQE_forward.R R/QTL_select.R R/QC.mppData.R R/MQE_proc.R R/QTLModelSIM.R R/QTLModelQeff.R R/IBD.mppData.R R/QC_GenotypingError.R R/mpp_SIM_clu.R R/geno_012.R R/QC_hetero.R R/QTL_pred_R2.R R/check.cr.ABH.R R/print.summary.mppData.R R/summary.QeffRes.R R/check_format_class.R R/print.summary.QeffRes.R R/mpp_perm.R R/QTL_gen_effects.R R/check_IBS.R R/mpp_CIM.R R/QC_matchMarker.R R/subset.mppData.R R/MQE_R2.R man/print.summary.mppData.Rd man/mpp_SIM.Rd man/mpp_CV.Rd man/CV_partition.Rd man/par_clu.Rd man/summary.QR2Res.Rd man/MQE_proc.Rd man/IBD.mppData.Rd man/USNAM_map.Rd man/mppData.Rd man/mppData_init.Rd man/inc_mat_QTL.Rd man/USNAM_pheno.Rd man/mpp_back_elim.Rd man/subset.mppData.Rd man/mpp_proc.Rd man/create.mppData.Rd man/plot.QTLprof.Rd man/print.summary.QR2Res.Rd man/summary.mppData.Rd man/USNAM_geno.Rd man/QTL_gen_effects.Rd man/parent_cluster.mppData.Rd man/design_connectivity.Rd man/summary.QeffRes.Rd man/IBS.mppData.Rd man/QC.mppData.Rd man/print.summary.QeffRes.Rd man/QTL_R2.Rd man/QTL_pred_R2.Rd man/mpp_CIM.Rd man/mpp_perm.Rd man/QTL_select.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_CIM.R tests/testthat/test_mpp_back_elim.R tests/testthat/test_QTL_R2.R tests/testthat/test_MQE_proc.R tests/testthat/test_QTL_gen_effects.R tests/testthat/test_SIM.R tests/testthat/test_mpp_proc.R
data/par_clu.rda
data/USNAM_geno.rda
data/mppData.rda
data/USNAM_map.rda
data/mppData_init.rda
data/datalist
data/USNAM_pheno.rda
mppR documentation built on May 31, 2019, 5:02 p.m.