View source: R/plot_allele_eff_GE.R
plot_allele_eff_GE | R Documentation |
Plot of the genome wide significance of the QTL allelic effects in multiple environments.
plot_allele_eff_GE( mppData, nEnv, EnvNames, Qprof, Q.eff = "par", QTL = NULL, ref_par = NULL, main = "QTL genetic effects plot", text.size = 18 )
mppData |
An object of class |
nEnv |
|
EnvNames |
|
Qprof |
object obtained with function |
Q.eff |
one of "cr", "par", "anc" or "biall". For the moment only "par" is available. |
QTL |
Optional argument. Object of class |
ref_par |
|
main |
Title of the graph. Default = "QTL genetic effects plot". |
text.size |
|
Vincent Garin
mppGE_CIM
, mppGE_SIM
data(mppData_GE) SIM <- mppGE_SIM(mppData = mppData_GE, trait = c('DMY_CIAM', 'DMY_TUM')) Qpos <- QTL_select(Qprof = SIM, threshold = 3, window = 50) plot_allele_eff_GE(mppData = mppData_GE, nEnv = 2, EnvNames = c('CIAM', 'TUM'), Qprof = SIM, Q.eff = 'par', QTL = Qpos, text.size = 14)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.