QTL_select | R Documentation |
Selection of QTL candidate positions.
QTL_select(Qprof, threshold = 3, window = 50, verbose = TRUE)
Qprof |
Object of class |
threshold |
|
window |
|
verbose |
|
The function select QTL positions that are above the given
threshold
per chromosome. Once a position has been selected, and
exclusion window
is set around that position. Positions falling into
that region will not be candidate anymore. The search continue until there
is no more candidate position above the threshold
.
Return:
QTL |
|
This function is a modification of the QTL.reduce function coming from the Biometris pipepline.
RAP (R Analytical Pipeline) (V0.9.1) May 2011
Authors: Paul Eilers (1), Gerrit Gort (1), Sabine Schnabel (1), Lucia Gutierrez(1, 2), Marcos Malosetti(1), Joost van Heerwaarden, and Fred van Eeuwijk(1)
(1) Wageningen University and Research Center, Netherlands (2) Facultad de Agronomia, UDELAR, Uruguay
mpp_SIM
, mpp_CIM
, mpp_perm
data(mppData)
SIM <- mpp_SIM(mppData)
QTL <- QTL_select(Qprof = SIM, threshold = 3)
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