NEWS.md

In mppR: Multi-Parent Population QTL Analysis

mppR 1.4.0

• Addition of function to perform multi-parent multi-environment QTL detection (mppGE_SIM, mppGE_CIM, mppGE_proc, etc.)
• Addition of a new vignette to illustrate the multi-parent multi-environment QTL detection
• Extra function (mppData_add_pheno, mppData_mdf_pheno) to manipulate mppData objects especially modify the phenotypic data

mppR 1.3.0

• Correction of few problems to load BCsFt populations (IBD.mppData).
• Addition of new options in MQE_proc: possibility to select a reference parent effect calculation, possibility to calculate a confidence interval for the QTL positions
• Addition of new functions (QTL_forward, mpp_forward) to realize a MPP QTL detection using a forward regression strategy

mppR 1.2.1

• Correction due to the fact that package synbreed was removed from CRAN
• The possibility to do marker imputation was suppressed.
• Small modification in the genetic effect plot. Inversion of color

mppR 1.2.0

• Corrections of bugs affecting the presentation of the QTL additive effects in: QTL_gen_effects(), MQE_gen_effects(), and the QTL reports of mpp_proc() and MQE_proc()
• Review of the vignette, small modifications in the documentation and in the error messages
• Stop to update the branch 'mppR_clusthaplo'. Stay two branches: 'master' containing the largest version of the package with mixed models and direct call to clusthaplo, and 'mppR_CRAN' a reduced version without the mixed models and the call to clusthaplo.

mppR 1.1.11

• Put dependency to the 'synbreed' package as suggested and not depends

mppR 1.1.10

• version of the package contained on branch 'mppR_CRAN' published on CRAN

mppR 1.1.8

• submission to CRAN
• Revision: suppress the dependency to clusthaplo. Form two branches on Github: 'mppR_clusthaplo' (contain function to call clusthaplo) and 'mppR_CRAN'

mppR 1.1.7

• publish mppR on Github

mppR documentation built on Jan. 6, 2023, 1:23 a.m.