nmext: Import model estimates from a NONMEM ext file

In mrgsolve: Simulate from ODE-Based Models

Import model estimates from a NONMEM ext file

Description

Import model estimates from a NONMEM ext file

Usage

nmext(
  run = NA_real_,
  project = getwd(),
  file = paste0(run, ".ext"),
  path = NULL,
  root = c("working", "cppfile"),
  index = "last",
  theta = TRUE,
  omega = TRUE,
  sigma = TRUE,
  olabels = NULL,
  slabels = NULL,
  oprefix = "",
  sprefix = "",
  tname = "THETA",
  oname = "...",
  sname = "...",
  read_fun = "data.table",
  env = NULL
)

Arguments

run	run number.
project	project directory.
file	deprecated; use path instead.
path	full path to NONMEM ext file.
root	the directory that path and project are relative to; this is currently limited to the working directory or cppdir, the directory where the model file is located.
index	the estimation number to return; "last" will return the last estimation results; otherwise, pass an integer indicating which estimation results to return.
theta	logical; if TRUE, the ⁠$THETA⁠ vector is returned.
omega	logical; if TRUE, the ⁠$OMEGA⁠ matrix is returned.
sigma	logical; if TRUE, the ⁠$SIGMA⁠ matrix is returned.
olabels	labels for ⁠$OMEGA⁠.
slabels	labels for ⁠$SIGMA⁠.
oprefix	prefix for ⁠$OMEGA⁠ labels.
sprefix	prefix for ⁠$SIGMA⁠ labels.
tname	name for ⁠$THETA⁠.
oname	name for ⁠$OMEGA⁠.
sname	name for ⁠$SIGMA⁠.
read_fun	function to use when reading the ext file.
env	internal use only.

See Also

nmxml(), read_nmext()

mrgsolve documentation built on Oct. 18, 2024, 5:12 p.m.