Man pages for mrgsolve
Simulate from ODE-Based Population PK/PD and Systems Pharmacology Models

aboutsolverAbout the ODEPACK differential equation solver used by...
as_bmatCoerce R objects to block or diagonal matrices.
as_data_setCreate a simulatinon data set from ev objects.
as_deslistCreate a list of designs from a data frame.
as.list_mrgmodCoerce a model object to list.
BLOCK_PARSEFunctions to parse code blocks.
blocksReturn the code blocks from a model specification file.
bmatCreate matrices from vector input.
camaRun the model cama function.
carry_outSelect items to carry into simulated output.
chainFunctions for chaining commands together.
cmt_list-classS4 cmt_list class
cmtnGet the compartment number from a compartment name.
codeExtract the code from a model.
cvecCreate create character vectors.
data_setSelect and modify a data set for simulation.
designSet observation designs for the simulation.
detailsExtract model details.
env_evalRe-evaluate the code in the ENV block.
env_getReturn model environment.
env_lsList objects in the model environment.
env_updateUpdate objects in model environment.
ev_assignReplicate a list of events into a data set.
ev-classS4 events class
ev_daysSchedule dosing events on days of the week.
eventsEvent objects for simulating PK and other interventions.
ev_opsOperations for ev objects.
ev_repReplicate an event object
ev_repeatRepeat a block of dosing events
ev_seqSchedule a series of event objects
exdatasetsExample input data sets.
expand.idataCreate template data sets for simulation.
file_showShow model specification and C++ files.
houseReturn a pre-compiled, PK/PD model.
idata_setSelect and modify a idata set for simulation.
initMethods for working with the model compartment list.
inventoryCheck whether all required parameters needed in a model are...
is.mrgmodCheck if an object is a model object.
is.mrgsimsCheck if an object is mrgsim output.
knobsRun sensitivity analysis on model settings.
lctranConvert select upper case column names to lower case to...
loadsoLoad the model shared object.
lower2matrixCreate a square numeric matrix from the lower-triangular...
matlistMethods for working with matrix-list objects.
matlist-classS4 class matlist.
matlist_opsOperations with matlist objects.
mcodeWrite, compile, and load model code.
mcRNGSet RNG to use L'Ecuyer-CMRG.
mergeMerge two lists.
modReturn the model object.
modelparseParse model specification text.
modlibInternal model library.
modlib_detailsmodlib: PK/PD Model parameters, compartments, and output...
modlib_pkmodlib: Pharmacokinetic models.
modlib_pkpdmodlib: Pharmacokinetic / pharmacodynamic models.
modlib_tmddmodlib: Target mediated disposition model.
modlib_viralmodlib: HCV viral dynamics models.
modlistCreate a modlist object.
modlist-classS4 class matlist.
modMATRIXCreate a matrix.
mreadRead a model specification file.
mrgmod-classS4 class for mrgsolve model object.
mrgsimSimulate from a model object.
mrgsimsMethods for working with 'mrgsims' objects.
mrgsims-classS4 class for mrgsolve simulation output.
mrgsims_dplyrMethods for handling output with dplyr verbs.
mrgsolve_exampleExtract example model from system library
mrgsolve_templateCreate model specification file from template
mvgaussSimulate from a multivariate normal distribution with mean...
nmxmlGet THETA, OMEGA and SIGMA from a completed NONMEM run
numeric2diagCreate a diagonal numeric matrix from diagonal elements.
numericlistMethods for numericlist.
numericlist-classS4 class numeric list.
obsaugAugment observations in the simulated output.
obsonlyCollect only observations in the simulated output.
omegaManipulate OMEGA matrices.
paramCreate and work with parameter objects.
parameter_list-classS4 parameter_list class
pk_modelSimulate from 1- or 2-compartment PK model.
plot_batch_mrgsimsPlot method for mrgsims objects.
plot_mrgsimsGenerate a quick plot of simulated data.
qsimA quick simulation function.
realize_addlMake addl doses explicit in an event object or data set.
recmatrixCreate a matrix of events for simulation.
relocateUpdate model or project in an model object.
rename_colsrename columns from vector for new names
renderRender a model to a document.
ReqRequest simulated output.
reservedReserved words.
revarGet model random effect variances and covariances.
scrape_and_callScrape options and pass to function.
scrape_optsScrape options from a code block.
seePrint model code to the console.
show-modlist-methodShow a modlist object.
show-mrgmod-methodPrint model details.
sigmaManipulate SIGMA matrices.
simargsAccess or clear arguments for calls to mrgsim.
solocReturn the location of the model shared object.
stimeGet the times at which the model will be evaluated.
tgridCreate a simtime object.
tgrid_opsOperations with tgrid objects.
touch_funsGet inits from compiled function.
tscaleRescale time in the simulated output.
updateGet all names from a model object.
valid_dataValidate and prepare data sets for simulation.
zchainForward pipe.
mrgsolve documentation built on Nov. 17, 2017, 4:46 a.m.