Man pages for mrgsolve
Simulate from ODE-Based Population PK/PD and Systems Pharmacology Models

aboutsolverAbout the ODEPACK differential equation solver used by...
as_bmatCoerce R objects to block or diagonal matrices
as_data_setCreate a simulatinon data set from ev objects
as_deslistCreate a list of designs from a data frame
as.evCoerce an object to class ev
as.list_mrgmodCoerce a model object to list.
as.list-mrgsims-methodCorece an mrgsims object to list
BLOCK_PARSEFunctions to parse code blocks
blocksReturn the code blocks from a model specification file
bmatCreate matrices from vector input
camaRun the model cama function
carry_outSelect items to carry into simulated output
chainFunctions for chaining commands together
cmt_list-classS4 cmt_list class
cmtnGet the compartment number from a compartment name
codeExtract the code from a model
cvecCreate create character vectors
data_qsimCreate a matrix of events and observations for simulation
data_setSelect and modify a data set for simulation
designSet observation designs for the simulation
detailsExtract model details.
do_mrgsimDo an mrgsim run
env_evalRe-evaluate the code in the ENV block
env_getReturn model environment
env_lsList objects in the model environment
env_updateUpdate objects in model environment
evEvent objects for simulating PK and other interventions
ev_assignReplicate a list of events into a data set
ev-classS4 events class
ev_daysSchedule dosing events on days of the week
ev_dplyrdplyr verbs for event objects
eventsDEPRECATED: get an events object from a model object
ev_methodsVarious methods for event objects
ev_opsOperations for ev objects
ev_repReplicate an event object
ev_repeatRepeat a block of dosing events
ev_seqSchedule a series of event objects
exdatasetsExample input data sets.
expand.idataCreate template data sets for simulation
file_showShow model specification and C++ files.
houseReturn a pre-compiled, PK/PD model
idata_setSelect and modify a idata set for simulation
initMethods for working with the model compartment list
inventoryCheck whether all required parameters needed in a model are...
is.mrgmodCheck if an object is a model object
is.mrgsimsCheck if an object is mrgsim output.
knobsRun sensitivity analysis on model settings.
lctranConvert select upper case column names to lower case to...
loadsoLoad the model shared object
lower2matrixCreate a square numeric matrix from the lower-triangular...
matlistMethods for working with matrix-list objects
matlist-classS4 class matlist
matlist_opsOperations with matlist objects.
mcodeWrite, compile, and load model code
mcRNGSet RNG to use L'Ecuyer-CMRG
mergeMerge two lists
modReturn the model object
modelparseParse model specification text.
modlibInternal model library.
modlib_detailsmodlib: PK/PD Model parameters, compartments, and output...
modlib_pkmodlib: Pharmacokinetic models
modlib_pkpdmodlib: Pharmacokinetic / pharmacodynamic models
modlib_tmddmodlib: Target mediated disposition model
modlib_viralmodlib: HCV viral dynamics models
modlistCreate a modlist object.
modlist-classS4 class matlist.
modMATRIXCreate a matrix
mreadRead a model specification file
mrgmod-classS4 class for mrgsolve model object
mrgsimSimulate from a model object
mrgsimsMethods for working with 'mrgsims' objects.
mrgsims-classS4 class for mrgsolve simulation output.
mrgsims_dplyrMethods for handling output with dplyr verbs
mrgsim_variantsmrgsim variant functions
mrgsolve_packagemrgsolve
mvgaussSimulate from a multivariate normal distribution with mean...
names-mrgmod-methodGet all names from a model object
nmxmlGet THETA, OMEGA and SIGMA from a completed NONMEM run
numeric2diagCreate a diagonal numeric matrix from diagonal elements
numericlistMethods for numericlist
numericlist-classS4 class numeric list
obsaugAugment observations in the simulated output
obsonlyCollect only observations in the simulated output
omegaManipulate OMEGA matrices
paramCreate and work with parameter objects
parameter_list-classS4 parameter_list class
PKMODELParse PKMODEL BLOCK data.
plot_batch_mrgsimsPlot method for mrgsims objects.
plot_mrgsimsGenerate a quick plot of simulated data
plot_simsPlot data as an mrgsims object
qsimA quick simulation function
read_nmextExtract estimates from NONMEM ext file
realize_addlMake addl doses explicit in an event object or data set
recmatrixCreate a matrix of events for simulation
relocateUpdate model or project in an model object
rename_colsrename columns from vector for new names
renderRender a model to a document
ReqRequest simulated output
reservedReserved words.
revarGet model random effect variances and covariances
scrape_and_callScrape options and pass to function.
scrape_optsScrape options from a code block.
seePrint model code to the console
show-modlist-methodShow a modlist object.
show-mrgmod-methodPrint model details
sigmaManipulate SIGMA matrices
simargsAccess or clear arguments for calls to mrgsim
solocReturn the location of the model shared object
solversettingsOptional inputs for DLSODA
stimeGet the times at which the model will be evaluated
tgridCreate a simtime object
tgrid_opsOperations with tgrid objects
touch_funsGet inits from compiled function
tscaleRescale time in the simulated output
updateUpdate the model object
valid_dataValidate and prepare data sets for simulation
zchainForward pipe.
mrgsolve documentation built on April 28, 2018, 1:04 a.m.