mvSLOUCH: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history.

Install the latest version of this package by entering the following in R:
install.packages("mvSLOUCH")
AuthorKrzysztof Bartoszek <bartoszekkj@gmail.com>
Date of publication2016-06-06 20:25:26
MaintainerKrzysztof Bartoszek <bartoszekkj@gmail.com>
LicenseGPL (>= 2) | file LICENCE
Version1.3.2

View on CRAN

Functions

.beginEstimationParams Man page
.bm.phyl.cov Man page
.bm.phyl.mean Man page
BrownianMotionModel Man page
.calcAncestorTimes Man page
.calcAprecalcMatrices Man page
.calcCI Man page
.calc.cov.ouch.mv Man page
.calc.cov.slouch.mv Man page
.calc.exptA Man page
.calc.exptA.2dim Man page
.calc.integral.evAStevA Man page
.calc.integral.evAStevA.2dim Man page
.calc.intercept Man page
.calcLogLikParametrized Man page
.calc.mean.ouch.mv Man page
.calc.mean.slouch.mv Man page
.calc.phyl.cov Man page
.calc.phyl.halflife Man page
.calc.phyl.LogLik.traits Man page
.calc.phyl.mean Man page
.calcTreeDist Man page
.calculate.Tree.dists Man page
.calc.vec.dist Man page
.CalcVlq Man page
.CalcVlq2 Man page
.CalcVlqStat Man page
.ci.HL.loglikfunc Man page
.ci.listParams Man page
.ci.loglikfunc Man page
.ci.vectorizeParams Man page
.cleanUpModelParams Man page
.col.rot Man page
.correct.names Man page
.decompEigenA.S Man page
drawPhylProcess Man page
.drawRandomNiches Man page
.drawRandomRegimes Man page
.dzetaIJ.matrix Man page
.dzetaKappa.intercept Man page
.dzetaKappa.matrix Man page
.dzetaKappa.matrix2 Man page
.dzetaKappa.matrix.simp.t Man page
.dzetaKappa.simp.intercept Man page
.dzeta.matrix.t Man page
.dzeta.matrix.t1t2 Man page
.dzeta.matrix.t1t2v2 Man page
.dzeta.matrix.tv2 Man page
estimate.evolutionary.model Man page
.EvaluatePoint Man page
fitch.mvsl Man page
.generategrid Man page
.generate.model.description Man page
.generate.model.se Man page
generate.model.setups Man page
.generatenames Man page
.givens.mult.M Man page
.givens.real Man page
.GridEvaluatePointA Man page
.interpret.intercept Man page
.inv.rho.givens.real Man page
.Kappa.matrix Man page
.Kappa.matrix.NA Man page
.make.states.mvsl Man page
.min.mLogLik.BmPsi Man page
.min.RSS.BmPsi Man page
.MinusPhylLogLikFunc Man page
.MinusPhylLogLikFuncMVslouch Man page
.MinusPhylLogLikFuncouch Man page
.M.mult.givens Man page
mvSLOUCH Man page
mvslouchModel Man page
mvSLOUCH-package Man page
.num.inv.transform.positive Man page
.num.transform.positive Man page
.ouch2slouch.mvsl Man page
.ouch.design.matrix Man page
.ouch.GLS Man page
ouchModel Man page
.params.summary.bm Man page
.params.summary.mvslouch Man page
.params.summary.ouch Man page
.par.inv.transform Man page
.par.inv.transform.decomp.matrix Man page
.par.inv.transform.decomp.neg.real.matrix Man page
.par.inv.transform.decomp.pos.real.matrix Man page
.par.inv.transform.decomp.real.matrix Man page
.par.inv.transform.decomp.sym.matrix Man page
.par.inv.transform.invert.matrix Man page
.par.inv.transform.invert.qr.matrix Man page
.par.inv.transform.invert.svd.matrix Man page
.par.inv.transform.lowertri.matrix Man page
.par.inv.transform.normal.matrix Man page
.par.inv.transform.orth.matrix.cayley Man page
.par.inv.transform.orth.matrix.givens Man page
.par.inv.transform.symmetric.matrix Man page
.par.inv.transform.twobytwo.matrix Man page
.par.inv.transform.uppertri.matrix Man page
.par.transform Man page
.par.transform.decomp.matrix Man page
.par.transform.decomp.neg.real.matrix Man page
.par.transform.decomp.pos.real.matrix Man page
.par.transform.decomp.real.matrix Man page
.par.transform.decomp.sym.matrix Man page
.par.transform.invert.matrix Man page
.par.transform.invert.qr.matrix Man page
.par.transform.invert.svd.matrix Man page
.par.transform.lowertri.matrix Man page
.par.transform.normal.matrix Man page
.par.transform.orth.matrix.cayley Man page
.par.transform.orth.matrix.givens Man page
.par.transform.symmetric.matrix Man page
.par.transform.twobytwo.matrix Man page
.par.transform.uppertri.matrix Man page
.resizegrid Man page
.row.rot Man page
.set.estimparams Man page
.set.maxiter Man page
.set.paramatrizationnames Man page
.set.tol Man page
simulBMProcPhylTree Man page
simulMVSLOUCHProcPhylTree Man page
simulOUCHProcPhylTree Man page
.slouch.mv.design.matrix.YcT Man page
.slouch.mv.iGLS Man page
.slouch.mv.residual.covar Man page
.solve.reg Man page
SummarizeBM Man page
SummarizeMVSLOUCH Man page
SummarizeOUCH Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.