Files in mvSLOUCH
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
MD5
LICENCE
NAMESPACE
DESCRIPTION
R/modelparams.R
R/estimMAXLIK.R
R/getESS.R
R/fitch.mvsl.R
R/trees2slouch.mvsl.R
R/matrixparametrizations.R
R/simulVasicekproc.R
R/phylgls.R
R/OUphylregression.R
R/PhyloSDEestim.R
R/regimes.R
R/simulclustphyl.R
R/simulVasicekprocphyl.R
R/calls_to_matrixcalc.R
R/ci.R
R/wrappers.R
R/loglik.R
R/precalcs.R
R/phyltree_paths.R
R/sdemeanphyl.R
R/sdecovariancephyl.R
R/evolmodelest.R
R/make.states.mvsl.R
R/bootstrap.R
R/modelparamstransform.R
R/modelparamssummary.R
R/estimBM.R
R/matrixexps.R
R/sdemoments.R
R/estimGLSGC.R
inst/GPL-3
inst/GPL-2
inst/CITATION
inst/doc/mvSLOUCH_Carnivorans.html
inst/doc/mvSLOUCH_Carnivorans.R
inst/doc/mvSLOUCH_Carnivorans.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/test-estimate.evolutionary.model.R
tests/testthat/test-simulMVSLOUCHProcPhylTree.R
tests/testthat/test-SummarizeOUCH.R
tests/testthat/test-parametric.bootstrap.R
tests/testthat/test-mvslouchModel.R
tests/testthat/test-SummarizeBM.R
tests/testthat/test-ouchModel.R
tests/testthat/test-simulOUCHProcPhylTree.R
tests/testthat/test-OU_phylreg.R
tests/testthat/test-OU_RSS.R
tests/testthat/test-BrownianMotionModel.R
tests/testthat/test-fitch.mvsl.R
tests/testthat/test-simulBMProcPhylTree.R
tests/testthat/test-OU_xVz.R
tests/testthat/test-simulate_clustered_phylogeny.R
tests/testthat/test-SummarizeMVSLOUCH.R
tests/testthat/test-phyltree_paths.R
vignettes/ScaledTree2_fan.png
vignettes/refs_mvSLOUCH.bib
vignettes/ScaledTree4_fan.png
vignettes/ScaledTree3_fan.png
vignettes/text_part_2.txt
vignettes/ScaledTree_fan.png
vignettes/mvSLOUCH_Carnivorans.Rmd
vignettes/text_part_3.txt
vignettes/Carnivora_mvSLOUCH_objects.RData
man/mvSLOUCH-package.Rd
man/BrownianMotionModel.Rd
man/OU_phylreg.Rd
man/simulate_clustered_phylogeny.Rd
man/mvSLOUCH-internal.Rd
man/SummarizeMVSLOUCH.Rd
man/SummarizeOUCH.Rd
man/estimate.evolutionary.model.Rd
man/parametric.bootstrap.Rd
man/simulBMProcPhylTree.Rd
man/ouchModel.Rd
man/OU_RSS.Rd
man/drawPhylProcess.Rd
man/mvslouchModel.Rd
man/simulMVSLOUCHProcPhylTree.Rd
man/phyltree_paths.Rd
man/fitch.mvsl.Rd
man/OU_xVz.Rd
man/plot.clustered_phylo.Rd
man/generate.model.setups.Rd
man/SummarizeBM.Rd
man/simulOUCHProcPhylTree.Rd
