Man pages for mvSLOUCH
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
| BrownianMotionModel | Estimate parameters under a Brownian motion model of... |
| drawPhylProcess | Plots the realization of a process evolving on a phylogenetic... |
| estimate.evolutionary.model | Wrapper function to find best (out of BM, OU, OUOU, OUBM)... |
| fitch.mvsl | Unordered Fitch parsimony reconstruction of discrete... |
| generate.model.setups | Generate a list of model setups for the function... |
| mvSLOUCH-internal | Internal mvSLOUCH objects |
| mvslouchModel | Estimate parameters under a (multivariate) OUBM model of... |
| mvSLOUCH-package | Multivariate Ornstein-Uhlenbeck type stochastic differential... |
| ouchModel | Estimate parameters under a (multivariate) OU model of... |
| OU_phylreg | Performs a phylogenetic regression under a given OU model of... |
| OU_RSS | Calculates the RSS under a (multivariate) phylogenetic OU... |
| OU_xVz | Performs a vector matrix vector multiplcation under a... |
| parametric.bootstrap | Parametric bootstrap for confidence intervals |
| phyltree_paths | Extract path information from a phylogenetic tree |
| plot.clustered_phylo | Plots a clustered_phylo object. |
| simulate_clustered_phylogeny | Simulate a phylogenetic tree with a specified number of... |
| simulBMProcPhylTree | Simulate data on a phylogeny under a (multivariate) Brownian... |
| simulMVSLOUCHProcPhylTree | Simulate data on a phylogeny under a (multivariate) OUBM... |
| simulOUCHProcPhylTree | Simulate data on a phylogeny under a (multivariate) OU model |
| SummarizeBM | Summarize parameters estimated under a Brownian motion model |
| SummarizeMVSLOUCH | Summarize parameters estimated under a multivariate OUBM... |
| SummarizeOUCH | Summarize parameters estimated under a (multivariate) OU... |
