getGeneRanking: Get gene ranking based on geneRank algorithm.

In netClass: netClass: An R Package for Network-Based Biomarker Discovery

Description

Get the ranking of differential expression of genes on graph using geneRank algorithm.

Usage

getGeneRanking(x = x, y = y, Gsub = Gsub, d = d)

Arguments

x	gene expression data
y	class labels
Gsub	Adjacency matrix of Protein-protein intersction network
d	damping factor for GeneRank, defaults value is 0.5

Value

r	ranking of each gebes on graph

Author(s)

Yupeng Cun [e-mail]

See Also

See Also as pGeneRank

Examples

library(netClass)
data(expr)
data(ad.matrix)
ex.sum <- expr$genes
y <- expr$y

#r= getGeneRanking(x = ex.sum, y = y, Gsub = ad.matrix, d = 0.5)

netClass documentation built on May 29, 2017, 7:18 p.m.