probeset2pathwayTrain: Search CROG in training data

In netClass: netClass: An R Package for Network-Based Biomarker Discovery

Description

Search CROG in training data, and using these CORG set to make a matrix for pathways.

Usage

probeset2pathwayTrain(x = x, y = y, int = int)

Arguments

x	gene expression data
y	a factor of length p comprising the class labels.
int	Common genes between gene expression data and interaction network.

Value

ap	top ranked pathays
selectedGenes	CROG genes

....

Author(s)

Yupeng Cun [e-mail]

References

Lee E, Chuang H-Y, Kim J-W, Ideker T, Lee D (2008) Inferring Pathway Activity toward Precise Disease Classification. PLoS Comput Biol 4(11): e1000217. doi:10.1371/journal.pcbi.1000217

See Also

See Also as pac.cv

Examples

#See Also as \name{pac.cv}

netClass documentation built on May 29, 2017, 7:18 p.m.