pGeneRANK: GeneRANK

In netClass: netClass: An R Package for Network-Based Biomarker Discovery

Description

Ranking gene based on Googles's PageRank algorithm

Usage

pGeneRANK(W, ex, d, max.degree = Inf)

Arguments

W	adjacency matrix of graph
ex	the fold change/ diffiencicial expression of genes
d	damping factor for GeneRank, defaults value is 0.5
max.degree	Max degree of graph

Value

r	ranking of each gebes on graph

Author(s)

Yupeng Cun [e-mail]

References

Morrison, Julie L., et al. "GeneRank: using search engine technology for the analysis of microarray experiments." BMC bioinformatics 6.1 (2005): 233.
Page, Lawrence, et al. "The PageRank citation ranking: bringing order to the web." (1999).

See Also

See Also as classify.frsvm

Examples

#See Also as {classify.frsvm}

netClass documentation built on May 29, 2017, 7:18 p.m.