Description Usage Arguments Value Author(s) See Also Examples
View source: R/hubNetworkAnalysisCV.R
Predicting the data using hub nodes classification model
1 2 | train.hubc(x = x, y = y, DEBUG = FALSE, Gsub = Gsub, gHub = gHub,
hubs = hubs, nperm = 500, node.ct = 0.95, Cs = 10^(-3:3))
|
x |
gene expression data for training. |
y |
Class labels |
DEBUG |
show debugging information in screen more or less. |
Gsub |
an adjacency matrix that represents the underlying biological network. |
gHub |
Subgraph of hubs of graph Gs |
hubs |
Hubs in graph Gs |
nperm |
number of permutation test steps |
node.ct |
cut off value for select highly quantile nodes in a nwtwork. Defaults to |
Cs |
Soft-margin tuning parameter of the SVM. Defaults to |
The list returned
trained |
The tranined models for traning folds |
feat |
The feature selected by each by the train |
Yupeng Cun yupeng.cun@gmail.com
See Also as cv.hubc
1 | #See cv.hubc
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