nucim: Nucleus Imaging Toolbox

Code for analysis of microscopy images of nuclei.

Author
Volker Schmid
Date of publication
2016-10-15 18:52:12
Maintainer
Volker Schmid <stats@volkerschmid.de>
License
GPL-3
Version
0.5.3
URLs

View on CRAN

Man pages

classify
Classify DAPI
classify.folder
Classify DAPI
classify.table
Classify DAPI from class image
class.neighbours
Class neighbourhood distribution
class.neighbours.folder
class.neighbours.folder
compute.distance2border
Compute distance to border of classes
dapimask
Mask DAPI in kernel
dapimask.file
Automatic DAPI mask segmentation for files
dapimask.folder
automatic DAPI mask segmentation for folder
extract.spots
Extract spots using adaptive thresholding and minimum spot...
extract.spots.DHS
Title Extract spots for DHS FISH
find.spots.file
Detects spotsfor one file
find.spots.folder
Detects spots
splitchannel
Split RGB channels
splitchannels.file
Split channels into files and extracts size in microns
splitchannels.folder
Split RGB images into channels and pixel size information

Files in this package

nucim
nucim/NAMESPACE
nucim/R
nucim/R/classes.R
nucim/R/extract_spots_DHS.R
nucim/R/dapimask.R
nucim/R/dapimask_folder.R
nucim/R/class_neighbours.R
nucim/R/find_spots.R
nucim/R/splitchannels.R
nucim/R/dapimask_file.R
nucim/R/extract_spots.R
nucim/R/splitchannel.R
nucim/R/onattach.R
nucim/R/compute_distance2border.R
nucim/MD5
nucim/DESCRIPTION
nucim/man
nucim/man/classify.table.Rd
nucim/man/splitchannel.Rd
nucim/man/find.spots.file.Rd
nucim/man/splitchannels.folder.Rd
nucim/man/classify.Rd
nucim/man/classify.folder.Rd
nucim/man/extract.spots.Rd
nucim/man/class.neighbours.folder.Rd
nucim/man/class.neighbours.Rd
nucim/man/dapimask.Rd
nucim/man/find.spots.folder.Rd
nucim/man/splitchannels.file.Rd
nucim/man/compute.distance2border.Rd
nucim/man/extract.spots.DHS.Rd
nucim/man/dapimask.folder.Rd
nucim/man/dapimask.file.Rd