find.spots.file: Detects spots for one file
In nucim: Nucleome Imaging Toolbox

Description Usage Arguments Value

View source: R/find_spots.R

Detects spots for one file

find.spots.file(
  file,
  dir,
  color,
  thresh = NULL,
  thresh.auto = FALSE,
  thresh.quantile = 0.9,
  filter = NULL,
  cores = 1
)

`file`	file
`dir`	directory for results
`color`	which color, images have to be in folder with color name
`thresh`	threshold
`thresh.auto`	Logical. Find threshold automatically?
`thresh.quantile`	numeric. use simple
`filter`	2d-filter to use before spot detection
`cores`	number of cores to use in parallel (with parallel package only)

spot images in spot-color/, number of spots as txt files in spot-color/

nucim documentation built on June 10, 2021, 9:07 a.m.

nucim index

README.md Chromatin compaction classification using DAPI intensity Workflow on a folder

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Tweet to @rdrrHQ

GitHub issue tracker

ian@mutexlabs.com